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A B C D E F G H I J L M N O P Q R S T U V W X

## A

absorb(NodeList) - Method in class norsys.netica.Net
  Deprecated. renamed to use `absorbNodes` for clarity.
absorbNodes(NodeList) - Method in class norsys.netica.Net
  absorbNodes()node: absorbing absorbing nodes link: automatically added remove node summing out a variable maxing out a variableAbsorbs the passed nodes, so that they are removed from the net, but the net's overall joint probability distribution for the remaining nodes is unchanged.
action() - Method in class norsys.netica.Node
addCases(DatabaseManager, double, NodeList, String, String, String, String) - Method in class norsys.netica.Caseset
  addCases()degree of cases Caseset: in use findings: getting from database case: getting from database DatabaseManager: making case-set Caseset: getting from database database: getting cases from SELECT SQL command SQL commands: SELECT addCases: in use DatabaseManager: in use Caseset: in use DatabaseManager: in use Learner: in use Learner: in use EM_LEARNING: in use learnCPTs: in useSearches the database attached to dbMgr for cases to add to this caseset.
addCases(Streamer, double, String) - Method in class norsys.netica.Caseset
  addCases()degree of cases case file: reading Caseset: adding case file to Streamer: adding to case-setIndicates that all the cases within inStream should be added to this caseset.
addLink(Node) - Method in class norsys.netica.Node
  addLink()link: adding add parent parent nodes: adding toAdds a link from parentNode to this node, and returns the index of the added link.
addListener(NeticaListener) - Method in class norsys.netica.General
  addListener()Adds the given listener to this object's list of listeners.
addListenerToAllComponents(EventListener) - Method in class norsys.netica.gui.NodePanel
addListenerToAllComponents(EventListener) - Method in interface norsys.netica.gui.RecursingEventListener
  Add the given EventListener to this object and, if it is a Container, to all RecursingEventListeners it contains.
addListenerToAllComponents(EventListener) - Method in class norsys.netica.gui.NetPanel
addNodes(Net, String, String, String, String) - Method in class norsys.netica.DatabaseManager
  addNodes()getAllNodesets node-set: retrieving all node-set: ordering by priority priority order of node-sets order of node-sets- in node-set names dash in node-set names case file: reading favor_discrete, for nodes from DB favor_continuous, for nodes from DB
addStates(int, String, int, double) - Method in class norsys.netica.Node
  addStates()node: modifying states states: adding Adds one or more states to this node, inserting them into the existing states.
addToNodeset(String) - Method in class norsys.netica.Node
  addToNodeset()sets of nodes node-set: adding nodeAdds this node to the node-set named nodeset.

## B

BELIEF_UPDATE - Static variable in class norsys.netica.Net
  BELIEF_UPDATE BELIEF_UPDATEA form of autoUpdate.

## C

calcState() - Method in class norsys.netica.Node
  calcState()UNDEF_STATE node: inference deterministic updating equation: evaluatingReturns the discrete finding entered for this node if one has been entered, or the state calculated from its neighbors if that can be done deterministically (e.g., by equation or function table), or else UNDEF_STATE.
calcValue() - Method in class norsys.netica.Node
  calcValue() UNDEF_DBL node: inference deterministic updating equation: evaluatingReturns the real-valued finding entered for this node if one has been entered, or the real value calculated from its neighbors if that can be done deterministically (e.g., by equation or function table), or else UNDEF_DBL.
Caseset - class norsys.netica.Caseset.
  A collection of cases.
Caseset() - Constructor for class norsys.netica.Caseset
  Caseset()Creates and returns a new Caseset, initially containing no cases, in the default environment, and with a name of null.
Caseset(String, Environ) - Constructor for class norsys.netica.Caseset
  Caseset()case-set: creating sets of cases Caseset: creatingCreates and returns a new Caseset, initially containing no cases.
clear() - Method in class norsys.netica.Value
  clear()Removes all the information kept regarding this value.
close() - Method in class norsys.netica.Streamer
  Deprecated. use `finalize` instead.
compile() - Method in class norsys.netica.Net
  compile()junction tree: creating belief updating: preparing for net: compiling compile net link: automatically addedCompiles this net for fast belief updating (i.e., junction tree propagation).
COMPLETE_CHECK - Static variable in class norsys.netica.Environ
  COMPLETE_CHECK COMPLETE_CHECKThe most thorough argument checking level; use only for debugging.
CONSTANT_NODE - Static variable in class norsys.netica.Node
  CONSTANT_NODE CONSTANT_NODEThe value of this node is considered unchanging until the net is rebuilt.
CONTINUOUS_TYPE - Static variable in class norsys.netica.Node
  CONTINUOUS_TYPE CONTINUOUS_TYPENode is for a continuous (analog) variable.
continuousInfoJLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBars
  For continuous Nature nodes only, this is the label at the bottom of the display giving the real value of the node (see `calcValue` ).
continuousInfoJLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBar
  For continuous Nature nodes only, this is the label at the bottom of the display giving the real value of the node (see `calcValue` ).
controlCaching(String, String, NodeList) - Method in class norsys.netica.Net
  controlCaching()Contact Norsys for information on this function.
controlConcurrency(String, String) - Method in class norsys.netica.Environ
  controlConcurrency()Environ: controlling concurrency inThis function is used to control how Netica operates in multi-threaded environments.
copyNodes(NodeList) - Method in class norsys.netica.Net
  copyNodes()net: transfering nodes disconnected link: creating copy nodes or net node: duplicatingDuplicates the nodes in nodeList, and puts the duplicates in this net.
COUNTING_LEARNING - Static variable in class norsys.netica.Learner
  COUNTING_LEARNING COUNTING_LEARNINGIndicates the case counting learning algorithm.
CREATE_EVENT - Static variable in class norsys.netica.NeticaEvent
  CREATE_EVENT CREATE_EVENTNot currently implemented.
createCustomReport(NodeList, String, String) - Method in class norsys.netica.Net
  createCustomReport()Creates a text (possibly HTML, RTF, TXT, etc.) report on this net, which is completely customizable using a text template, and can include a wide variety of information on the net, its nodes, links, probability tables, current findings, beliefs, decisions, sensitivity, junction tree, etc.
createNodePanel(Node, int) - Static method in class norsys.netica.gui.NodePanel
  Returns a NodePanel associated with node, of the given style.

## D

DatabaseManager - class norsys.netica.DatabaseManager.
  A resource for connecting to a database and importing case data or exporting findings to that database.
DatabaseManager(String, String, Environ) - Constructor for class norsys.netica.DatabaseManager
  DatabaseManager()Microsoft Access Microsoft Excel Access, Microsoft Excel, Microsoft Oracle database MySQL database SQL Server, MS database text file as database Windows ODBC Data Source Administrator connection pooling for DB pooling, connection, for DB database: connecting to ODBC connection string SQL connection string connection string for DB database connectivity DatabaseManager: creating DatabaseManager: in use DatabaseManager: in use executeSql: in useCreates and returns a new DatabaseManager object, which manages all interaction with a database.
DataDisplayer - interface norsys.netica.gui.DataDisplayer.
  An interface that any object that displays Netica data should implement.
DECISION_NODE - Static variable in class norsys.netica.Node
  DECISION_NODE DECISION_NODEThis node is for a variable that can be controlled by the agent (the "decision" node of an influence diagram).
DEFAULT_SAMPLING - Static variable in class norsys.netica.Net
  DEFAULT_SAMPLING DEFAULT_SAMPLINGA sampling method used by generateRandomCase.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
  The background color of this panel upon construction.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  The background color of this panel upon construction.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NetPanel
  The background color of this NetPanel upon construction.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  The background color of this panel upon construction.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NodePanel_Text
  The background color of this panel upon construction.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NodePanel_Circle
  The background color of this panel upon construction.
defaultBackgroundColor_ConstantNode - Static variable in class norsys.netica.gui.NodePanel
  Background Color for newly constructed Constant nodes.
defaultBackgroundColor_DecisionNode - Static variable in class norsys.netica.gui.NodePanel
  Background Color for newly constructed Decision nodes.
defaultBackgroundColor_NatureNode - Static variable in class norsys.netica.gui.NodePanel
  Background Color for newly constructed Nature nodes.
defaultBackgroundColor_UtilityNode - Static variable in class norsys.netica.gui.NodePanel
  Background Color for newly constructed Utility nodes.
defaultBbBarAreaColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  The color of the belief bar region.
defaultBbBarAreaWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  Width in pixels of the belief bar region.
defaultBbBarColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  The color of the belief bars.
defaultBbBarHeight - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  Height in pixels of the belief bars.
defaultBbBarHeight - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  Height in pixels of the belief bars.
defaultBbBarsAreaColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  The color of the belief bar region.
defaultBbBarsAreaWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  Width in pixels of the belief bars region.
defaultBbBarsColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  The color of the belief bars.
defaultBbItemHeight - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  Height in pixels of each belief bar row.
defaultBbItemHeight - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  Height in pixels of each belief bar row.
defaultBorder - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
  The javax.swing.border.Border surrounding the text.
defaultBorder - Static variable in class norsys.netica.gui.NodePanel_Text
  The javax.swing.border.Border surrounding the text.
defaultBorderColor - Static variable in class norsys.netica.gui.NodePanel
  The color of any border displayed by this panel upon construction.
defaultBorderColor - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
  The color of any border displayed by this panel.
defaultBorderColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  The color of the border displayed by this panel upon construction.
defaultBorderColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  The color of the border displayed by this panel upon construction.
defaultBorderColor - Static variable in class norsys.netica.gui.NodePanel_Circle
  The color of the border displayed by this panel upon construction.
defaultFont - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
  The Font used for displaying the text in this panel.
defaultFont - Static variable in class norsys.netica.gui.NodePanel_BeliefBarsRow
  The Font used for displaying the text in this panel.
defaultFont - Static variable in class norsys.netica.gui.NodePanel_BeliefBarRow
  The Font used for displaying the text in this panel.
defaultFont - Static variable in class norsys.netica.gui.NodePanel_Text
  The Font used for displaying the text in this panel.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel
  The color of any foreground items, such as text.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
  The color used for displaying the text in this panel.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  The color used for displaying the node title upon construction.
defaultForegroundColor - Static variable in class norsys.netica.gui.LinkGraphic
  The color of this LinkGraphic upon construction.
defaultForegroundColor - Static variable in class norsys.netica.gui.NetPanel
  The foreground color of this NetPanel upon construction.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBarsRow
  The color used for displaying the text in this panel.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  The color used for displaying the node title upon construction.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBarRow
  The color used for displaying the text in this panel.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_Text
  The color used for displaying the text in this panel.
defaultHeight - Static variable in class norsys.netica.gui.NodePanel_Circle
  Height in pixels of each circle/oval or hexagon.
defaultLineWidth - Static variable in class norsys.netica.gui.LinkGraphic
  The width of this LinkGraphic upon construction.
defaultLinkColor - Static variable in class norsys.netica.gui.NetPanel
  The color of any links drawn in this NetPanel.
defaultLinkPolicy - Static variable in class norsys.netica.gui.NetPanel
  defaultLinkPolicy One of LINK_POLICY_NONE, LINK_POLICY_BELOW, or LINK_POLICY_ABOVE.
defaultLinkWidth - Static variable in class norsys.netica.gui.NetPanel
  The width of the arrow shafts used in displaying links.
defaultRoundedCornerArcHeight - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
  The arc-height of the rounded rectangle box upon construction.
defaultRoundedCornerArcWidth - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
  The arc-width of the rounded rectangle box upon construction.
defaultStroke - Static variable in class norsys.netica.gui.LinkGraphic
  The java.awt.Stroke used when initially constructing LinkGraphic objects.
defaultTextBorder - Static variable in class norsys.netica.gui.NodePanel_BeliefBarsRow
  The Border around any text.
defaultTextBorder - Static variable in class norsys.netica.gui.NodePanel_BeliefBarRow
  The Border around any text.
defaultTitleBorder - Static variable in class norsys.netica.gui.NodePanel
  The Border around any title text.
defaultTitleBorder - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  The javax.swing.border.Border object surrounding the node title upon construction.
defaultTitleBorder - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  The javax.swing.border.Border object surrounding the node title upon construction.
defaultTitleFont - Static variable in class norsys.netica.gui.NodePanel
  The Font of the title, if any.
defaultTitleFont - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  The Font used for displaying the node title upon construction.
defaultTitleFont - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  The Font used for displaying the node title upon construction.
defaultWidth - Static variable in class norsys.netica.gui.NodePanel_Circle
  Width in pixels of each circle/oval or hexagon.
delete() - Method in class norsys.netica.Node
  delete()remove node node: deletingRemoves this node from its net, and frees all resources (e.g., memory) it was using.
delete() - Method in class norsys.netica.Net
  Deprecated. use `finalize` instead.
delete() - Method in class norsys.netica.State
  delete()node: modifying states states: removingRemoves this state from its node, so that the node has one fewer state.
deleteLink(int) - Method in class norsys.netica.Node
  deleteLink()link: deletingDelete the link entering this node from the given parent node.
deleteTables() - Method in class norsys.netica.Node
  deleteTables()node: deleting tables tables: deleting CPT table: deleting function table: deleting experience table: deletingDeletes this node's function table, its CPT table, and its experience table.
DISCONNECTED_NODE - Static variable in class norsys.netica.Node
  DISCONNECTED_NODE DISCONNECTED_NODEThis node is just a placeholder for a disconnected link, to indicate the type of parent it requires.
DISCRETE_TYPE - Static variable in class norsys.netica.Node
  DISCRETE_TYPE DISCRETE_TYPENode is for a discrete (digital) variable.
DISPLAY_MODE_GRAYED - Static variable in class norsys.netica.gui.NodePanel
  Used to display this NodePanel as "grayed" or "inactive".
DISPLAY_MODE_GRAYED - Static variable in class norsys.netica.gui.LinkGraphic
  Used to display this LinkGraphic as "grayed" or "inactive".
DISPLAY_MODE_HILITED - Static variable in class norsys.netica.gui.NodePanel
  Used to display this NodePanel as having been specially selected.
DISPLAY_MODE_HILITED - Static variable in class norsys.netica.gui.LinkGraphic
  Used to display this LinkGraphic as having been specially selected.
DISPLAY_MODE_NORMAL - Static variable in class norsys.netica.gui.NodePanel
  Used to display this NodePanel in normal fashion.
DISPLAY_MODE_NORMAL - Static variable in class norsys.netica.gui.LinkGraphic
  Used to display this LinkGraphic in normal fashion.
DUPLICATE_EVENT - Static variable in class norsys.netica.NeticaEvent
  DUPLICATE_EVENT DUPLICATE_EVENTNot currently implemented.
duplicateNodes(NodeList) - Method in class norsys.netica.Net
  Deprecated. use `copyNodes` instead.

## E

EM_LEARNING - Static variable in class norsys.netica.Learner
  EM_LEARNING EM_LEARNINGIndicates the EM (Expectation Maximization) learning algorithm.
enterCalibration(float[]) - Method in class norsys.netica.Value
  Currently, for internal use only.
enterFinding(int) - Method in class norsys.netica.Node
  Deprecated. use `finding().enterState (stateIndex)` instead.
enterFinding(String) - Method in class norsys.netica.Node
  Deprecated. use `finding().enterState (stateName)` instead.
enterFindingNot(int) - Method in class norsys.netica.Node
  Deprecated. use `finding().enterStateNot (stateIndex)` instead.
enterGaussian(double, double) - Method in class norsys.netica.Value
  enterGaussian()finding: entering Gaussian Gaussian finding normal distribution findingEnters a likelihood finding for this Value object equivalent to a Gaussian distribution (normal distribution) with a mean of mean and a standard deviation of stddev.
enterInterval(double, double) - Method in class norsys.netica.Value
  enterInterval()interval finding finding: entering intervalEnters a likelihood finding for this Value object equivalent to an interval extending from low to high: [low, high].
enterLikelihood(float[]) - Method in class norsys.netica.Node
  Deprecated. use `finding().enterLikelihood (likelihood)` instead.
enterLikelihood(float[]) - Method in class norsys.netica.Value
  enterLikelihood()Declares that this discrete or discretized node's random variable abides by the given likelihood distribution.
enterReal(double) - Method in class norsys.netica.Value
  enterReal()Declares that this continuous node has the exact value value.
enterState(int) - Method in class norsys.netica.Value
  enterState()finding: entering positive finding: enteringDeclares that this discrete node is in the state whose index is stateIndex.
enterState(String) - Method in class norsys.netica.Value
  enterState()Declares that this discrete node is in the state named stateName.
enterStateNot(int) - Method in class norsys.netica.Value
  enterStateNot()finding: entering negative finding: enteringDeclares that this discrete or discretized node is not in the state with index stateIndex.
enterValue(double) - Method in class norsys.netica.Node
  Deprecated. use `finding().enterReal (value)` instead.
ENTROPY_SENSV - Static variable in class norsys.netica.Sensitivity
  ENTROPY_SENSV ENTROPY_SENSVMeasure entropy or mutual information.
Environ - class norsys.netica.Environ.
  The background environment for all Netica operations.
Environ(String) - Constructor for class norsys.netica.Environ
  Environ()Environ: initializingConstructs an initialized Netica environment.
equationToTable(int, boolean, boolean) - Method in class norsys.netica.Node
  equationToTable()node: equation compile net: preparing for tables: building from equation equation: building table generating table from equationBuilds the CPT for this node based on the equation that has been associated with it (see setEquation).
ERROR_ERR - Static variable in class norsys.netica.NeticaError
  ERROR_ERR ERROR_ERREvent occurred at "error" level - operation not properly finished, but no internal inconsistencies (e.g., user error, didn't finish process).
eventOccurred(NeticaEvent) - Method in class norsys.netica.General
  eventOccurred()Netica calls back this method when an event occurred to an object we expressed interest in (by calling addListener).
eventOccurred(NeticaEvent) - Method in interface norsys.netica.NeticaListener
  eventOccurred()A call-back method that Netica will call to indicate an event occurred.
eventOccurred(NeticaEvent) - Method in class norsys.netica.gui.NodePanel
  A call-back method that Netica will call to indicate an event occurred.
eventOccurred(NeticaEvent) - Method in class norsys.netica.gui.NetPanel
  A call-back method that Netica will call to indicate an event occurred.
EVERY_STATE - Static variable in class norsys.netica.Node
  Deprecated. use State.EVERY_STATE
EVERY_STATE - Static variable in class norsys.netica.State
  EVERY_STATE EVERY_STATEA "wildcard" state that matches all states of a node.
executeSql(String, String) - Method in class norsys.netica.DatabaseManager
  executeSql()DatabaseManager: DB commands database: executing SQL SQL commands: arbitraryExecutes sqlCmd, an arbitrary SQL1 command.
expandTimeSeries(int, double, double, String) - Method in class norsys.netica.Net
  expandTimeSeries()Expands this dynamic Bayes net (DBN) to create one with time slices in the same way Netica Application does.

## F

fadeCPTable(double) - Method in class norsys.netica.Node
  fadeCPTable()tables: fading CPT table: fadingSmoothes the conditional probabilities (CPT) of this node to indicate greater uncertainty, which accounts for the idea that the world may have changed a little since they were last learned.
finalize() - Method in class norsys.netica.RandomGenerator
  finalize()random number generator: deletingRemoves this RandomGenerator object and frees all its resources (e.g., memory).
finalize() - Method in class norsys.netica.NetTester
  finalize()NetTester: deletingRemoves the NetTester object and frees all its resources (e.g., memory).
finalize() - Method in class norsys.netica.Node
  finalize()Called by the garbage collector, when this node can no longer be referenced.
finalize() - Method in class norsys.netica.DatabaseManager
  finalize()DatabaseManager: deletingRemoves this DatabaseManager from the system, and releases all the resources it uses (memory, connections, etc.).
finalize() - Method in class norsys.netica.Net
  finalize()net: deletingRemoves this net from the system, and releases all resources it uses (e.g., frees memory), including all its substructures (e.g., nodes).
finalize() - Method in class norsys.netica.Caseset
  finalize()Caseset: deletingRemoves the Caseset and frees all its resources (e.g., memory).
finalize() - Method in class norsys.netica.Sensitivity
  finalize()Sensitivity: deletingFrees all resources this Sensitivity is using.
finalize() - Method in class norsys.netica.Streamer
  finalize()Streamer: deletingReleases the resources (e.g., memory) used by this Streamer.
finalize() - Method in class norsys.netica.Learner
  finalize()Learner: deletingRemoves the Learner object and frees all its resources (e.g., memory).
finalize() - Method in class norsys.netica.Environ
  finalize()Environ: deleting ending NeticaCloses down Netica and frees all its resources (e.g., memory).
finding() - Method in class norsys.netica.Node
  finding()Returns the Value object holding this node's finding (aka, "evidence") information.
FIRST_CASE - Static variable in class norsys.netica.Net
  FIRST_CASE FIRST_CASEPass this to read the first case.
flush() - Method in class norsys.netica.Streamer
  flush()For a Streamer constructed from a java.io.OutputStream (see Streamer(OutputStream,String,Environ)), this will transfer the current contents of the Streamer to the the java.io.OutputStream.
FORWARD_SAMPLING - Static variable in class norsys.netica.Net
  FORWARD_SAMPLING FORWARD_SAMPLINGA sampling method used by generateRandomCase.
FROM_DEVELOPER_CND - Static variable in class norsys.netica.NeticaError
  FROM_DEVELOPER_CND FROM_DEVELOPER_CNDYour program indicated the error.
FROM_WRAPPER_CND - Static variable in class norsys.netica.NeticaError
  FROM_WRAPPER_CND FROM_WRAPPER_CNDThe error did not occur within native Netica itself, but in the JAVA API wrapper layer.

## G

GAUSSIAN_VALUE - Static variable in class norsys.netica.Value
  GAUSSIAN_VALUEThis node's continuous random variable has a gaussian likelihood distribution.
General - class norsys.netica.General.
  A class that provides generic useful documentation and utility information regarding a Netica object.
General() - Constructor for class norsys.netica.General
generateRandomCase(NodeList, int, double, RandomGenerator) - Method in class norsys.netica.Net
  generateRandomCase()findings: generating random synthetic data logic sampling random case generation case: generating random sampling simulation DEFAULT_SAMPLING FORWARD_SAMPLING JOIN_TREE_SAMPLINGGenerate a random case by simulation.
generateRandomNumbers(double[], int, String) - Method in class norsys.netica.RandomGenerator
  generateRandomNumbers()Generates num pseudo-random numbers using this RandomGenerator and puts them in the array results, returning the first one.
getAllNets(Environ) - Static method in class norsys.netica.Net
  getAllNets()Retrieves from the given env a collection of all the Nets defined in that Environ.
getAllNodesets(boolean) - Method in class norsys.netica.Net
  getAllNodesets()Returns a string which is a list of all node-sets defined for this net, separated by commas, in priority order, with highest priority first.
getArgumentChecking() - Method in class norsys.netica.Environ
  getArgumentChecking()argument checkingReturns the current argument checking level, which is the degree to which Netica checks method call arguments.
getArrowHeadLength() - Method in class norsys.netica.gui.LinkGraphic
  Gets the length of the arrow head.
getArrowHeadWidth() - Method in class norsys.netica.gui.LinkGraphic
  Gets the width of the arrow head.
getAutoUpdate() - Method in class norsys.netica.Net
  getAutoUpdate()net: auto-updating auto-updating BELIEF_UPDATEReturns this net's current auto-updating value.
getBelief(String) - Method in class norsys.netica.Node
  getBelief()Gets the belief that this node is in the given named state.
getBeliefs() - Method in class norsys.netica.Node
  getBeliefs()probability (as float)node: inference belief updating propagating beliefs beliefs: calculating posterior probabilities: calculating Returns a belief vector indicating the current probability for each state of this node.
getBytes(String) - Method in class norsys.netica.User
  getBytes()user-defined fields: retrievingReturns the user-defined byte array associated with this fieldName, or null, if the field was never set.
getCaseFileDelimChar() - Method in class norsys.netica.Environ
  getCaseFileDelimChar()Gets the character to use as a delimeter when creating case files.
getCenterPoint() - Method in class norsys.netica.gui.LinkGraphic
  Gets the center point of the link.
getChildNodePanel() - Method in class norsys.netica.gui.LinkGraphic
  Return the NodePanel that is nearest to the arrow end of this link.
getChildren() - Method in class norsys.netica.Node
  getChildren()link: detecting node: children child nodes: retrievingReturns a list of the children of this node.
getComment() - Method in class norsys.netica.General
  getComment()node: comment comment: for node, net, or state net: comment comment: for net state: comment comment: for state descriptive text for net, node, or stateGets the documentation text concerning this object.
getConfusion(Node, int, int) - Method in class norsys.netica.NetTester
  getConfusion()predicted vs actual NetTester: confusion matrix confusion matrixReturns the number of times the Net predicted predictedState for node, but the case file actually held actualState as the value of that node, during the performance test of a net.
getConstructorClass() - Static method in class norsys.netica.Node
  getConstructorClass()Retrieves the classname of the class that Netica-J uses when constructing a Node.
getConstructorClass() - Static method in class norsys.netica.Net
  getConstructorClass()Retrieves the classname of the class that Netica-J uses when automatically constructing new Nets.
getCPTable(float[]) - Method in class norsys.netica.Node
  getCPTable()Retrieves the entire CPTable of this node as a 1-D array.
getCPTable(int[], float[]) - Method in class norsys.netica.Node
  getCPTable()probability (as float)node: CPT table tables: retrieving tables: conditional probability CPT table: retrievingReturns the conditional probabilities of this node, given that its parents are in the states indicated by the parentStates vector, by looking them up in the node's CPT table.
getCPTable(String, float[]) - Method in class norsys.netica.Node
  getCPTable()This does the same as getCPTable(int[], float[]) except that it takes the parent states as a string rather than as an integer array.
getDefaultEnviron() - Static method in class norsys.netica.Environ
  getDefaultEnviron()Returns the last created Environ.
getDisplayMode() - Method in class norsys.netica.gui.NodePanel
  Returns whether the node is grayed, normal, or hi-lited.
getDisplayMode() - Method in class norsys.netica.gui.LinkGraphic
  Returns whether the link is grayed, normal, or hi-lited.
getElimOrder() - Method in class norsys.netica.Net
  getElimOrder()net: elimination order elimination orderReturns a list of the nodes of this net in their "elimination order" (which is used for triangulation in the compilation of this net), or null if there is no order currently associated with this net.
getEndPoint() - Method in class norsys.netica.gui.LinkGraphic
  Gets the endpoint (arrowhead end) of the link.
getEnviron() - Method in class norsys.netica.RandomGenerator
  getEnviron()Returns this RandomGenerator's environment.
getEnviron() - Method in class norsys.netica.General
  getEnviron()Returns the Environ this object belong's to.
getEnviron() - Method in class norsys.netica.DatabaseManager
  getEnviron()Returns this DatabaseManager's Netica environment.
getEnviron() - Method in class norsys.netica.Caseset
  getEnviron()Returns the Environ that this object belongs to.
getEnviron() - Method in class norsys.netica.Streamer
  getEnviron()Returns this Streamer's environment.
getEnviron() - Method in class norsys.netica.Learner
  getEnviron()Returns the Environ that this object belongs to.
getEquation() - Method in class norsys.netica.Node
  getEquation()node: equation equation: retrievingReturns the equation associated with this node, or the empty string (rather than null), if this node does not have an equation.
getErrorRate(Node) - Method in class norsys.netica.NetTester
  getErrorRate()NetTester: error rate error rateReturns the accumulated "error rate" of node under the tests previously performed with test.
getExpectedUtils() - Method in class norsys.netica.Node
  getExpectedUtils()expected utility utility: retrieving expected utility (as float)node: inferenceReturns a vector providing the expected utility of each choice in a decision node, considering findings currently entered.
getExpectedValue(double[]) - Method in class norsys.netica.Node
  getExpectedValue()standard deviation UNDEF_DBL node: inference expected valueReturns the expected real value of this node, based on the current beliefs for this node, and if moments is non-null, moments will be filled with the moments as well.
getExperTable(int[], double[]) - Method in class norsys.netica.Node
  getExperTable() UNDEF_DBL node: experience table tables: retrieving tables: experience experience table: retrieving number of cases estimated sample size essGiven parentStates, a vector of states for the parents of this node, this returns the "experience" of the node for the situation described by the parent states.
getFileName() - Method in class norsys.netica.Net
  getFileName()net: file associated with file name of netReturns the name of the file (including full path) that this net was last written to or read from.
getFileName() - Method in class norsys.netica.Streamer
  getFileName()file name of streamerReturns the name of the file (including full path) that this stream was last written to or read from, if any.
getFinding() - Method in class norsys.netica.Node
  Deprecated. use `finding().getState()` instead.
getFindingsProbability() - Method in class norsys.netica.Net
  getFindingsProbability()net: probability of findings joint probability of findings probability of all findings case: probability of findings: probability ofReturns the joint probability of the findings entered into net so far (including any negative or likelihood findings).
getIdNumber() - Method in class norsys.netica.NeticaError
  getIdNumber()error reporting: getting ID numberReturns the error number identifying this error.
getIndex() - Method in class norsys.netica.State
  getIndex()Returns the index number of this state.
getInputIndex(String) - Method in class norsys.netica.Node
  getInputIndex()node: input namesReturns the link index number of the link whose name is linkName, or -1 if there isn't one with that name (case sensitive comparison).
getInputName(int) - Method in class norsys.netica.Node
  getInputName()link: name node: input names input names of nodeGets the name of this node's input (i.e., link) identified by the given index.
getJointProbability(NodeList, int[]) - Method in class norsys.netica.Net
  getJointProbability()joint probabilityReturns the joint probability that each node in nodeList is in the corresponding state of nodeStates, given the findings currently entered in the Bayes net.
getKind() - Method in class norsys.netica.NeticaEvent
  getKind()Returns what kind of event occurred.
getKind() - Method in class norsys.netica.Node
  getKind()node kind node: kind kind of node disconnected link: determining whether NATURE_NODE CONSTANT_NODE DECISION_NODE UTILITY_NODE DISCONNECTED_NODEReturns whether this node is a nature, decision, utility or constant node.
getKind() - Method in class norsys.netica.Value
  getKind()node findings: determining kind REAL_VALUE STATE_VALUE STATE_NOT_VALUE LIKELIHOOD_VALUEReturns the type of information we have on this node's value.
getLabel() - Method in class norsys.netica.General
getLabel(String) - Method in class norsys.netica.General
getLevels() - Method in class norsys.netica.Node
  getLevels()level of discretized node (as double)node: levels states: levelsReturns the list of numbers used to enable a continuous node to act discrete, or enables a discrete node to provide real-valued numbers.
getLikelihood() - Method in class norsys.netica.Node
  Deprecated. use `finding().getLikelihood(null)` instead.
getLikelihood(float[]) - Method in class norsys.netica.Value
  getLikelihood()Returns as a likelihood vector the accumulated (likelihood and other) values entered for this discrete or discretized node.
getLinkGraphics() - Method in class norsys.netica.gui.NetPanel
  Returns a collection of LinkGraphic objects, one for each link in the Net.
getLogLoss(Node) - Method in class norsys.netica.NetTester
  getLogLoss()MOAC - mean over all cases NetTester: logarithmic loss logarithmic lossReturns the "logarithmic loss" of node under the tests previously performed with test.
getMaxIterations() - Method in class norsys.netica.Learner
  getMaxIterations()Returns the maximum number of learning-step iterations for learnCPTs.
getMaxMemoryUsage() - Method in class norsys.netica.Environ
  Deprecated. use `getMemoryUsageLimit()` instead.
getMaxTolerance() - Method in class norsys.netica.Learner
  getMaxTolerance()Returns the tolerance for the minimum change in data log likelihood between consecutive passes through the data, as a termination condition for any learning to be done by learner.
getMemoryUsageLimit() - Method in class norsys.netica.Environ
  getMemoryUsageLimit()Returns the current limit on memory that Netica is permitted to allocate for tables.
getMessage() - Method in class norsys.netica.NeticaError
  getMessage()error reporting: getting descriptionReturns a message explaining the error.
getMessage() - Method in class norsys.netica.NeticaException
  getMessage()Returns a formatted String detailing the nature of this exception and listing the NeticaErrors which are responsible for it.
getMethod() - Method in class norsys.netica.Learner
  getMethod()Returns the algorithmic method used by this learner, one of COUNTING_LEARNING, EM_LEARNING, or GRADIENT_DESCENT_LEARNING.
getMissingDataChar() - Method in class norsys.netica.Environ
  getMissingDataChar()Gets the character used to indicate missing data when creating case files.
getMostProbableConfig(NodeList) - Method in class norsys.netica.Net
  getMostProbableConfig()most probable explanation MPEFinds the most probable configuration, also known as the most probable explanation (MPE), for all the nodes in the net.
getMutualInfo(Node) - Method in class norsys.netica.Sensitivity
  getMutualInfo()self information Sensitivity: for mutual info Sensitivity: for entropy mutual information entropy mutual information entropy reductionMeasures the mutual information between two nodes, which is how much a finding at one node (called the "varying node") is expected to alter the beliefs (measured as decrease in its entropy) at another node (called the "query node").
getName() - Method in class norsys.netica.General
  getName()net: name node: name state: name name: of net name: of node name: of node statesReturns the identifer name of this object.
getNet() - Method in class norsys.netica.Node
  getNet()node: net containingReturns the net that this node is part of.
getNet() - Method in class norsys.netica.NodeList
  getNet()Returns the Net that this NodeList's nodes come from.
getNet() - Method in class norsys.netica.gui.NetPanel
  Return the Net that this NetPanel represents.
getNetClass() - Method in class norsys.netica.Environ
getNeticaErrors() - Method in class norsys.netica.NeticaException
  getNeticaErrors()Returns a collection of the `NeticaError` objects describing the faults that are responsible for this exception.
getNode() - Method in class norsys.netica.State
  getNode()Returns the Node that this state belongs to.
getNode() - Method in class norsys.netica.Value
  getNode()Returns the Node that this Value object applies to.
getNode() - Method in class norsys.netica.VisualNode
  getNode()Returns the Node that this VisualNode represents.
getNode() - Method in class norsys.netica.gui.NodePanel
  Returns the Node corresponding to this NodePanel.
getNode(int) - Method in class norsys.netica.NodeList
  getNode()A convenience version of java.util.Vector.get(int), that returns a Node, rather than an Object, to save you from having to do the cast yourself.
getNode(String) - Method in class norsys.netica.Net
  getNode()net: finding node by name NodeList: finding node by name node: finding by nameReturns the node of this net which has a name exactly matching name (case sensitive comparison).
getNodeAtTime(String, double[]) - Method in class norsys.netica.Net
getNodeClass() - Method in class norsys.netica.Environ
getNodePanels() - Method in class norsys.netica.gui.NetPanel
  Returns the list of NodePanels contained by this NetPanel.
getNodes() - Method in class norsys.netica.Net
  getNodes()topological order net: getting nodes nodes in net: retrievingReturns a list of all the nodes in this net.
getNodesetColor(String) - Method in class norsys.netica.Net
  getNodesetColor()Retrieves the color of nodeset in this net.
getNodesWithDisplayMode(int) - Method in class norsys.netica.gui.NetPanel
  Returns the list of Nodes in this NetPanel that are in the display mode.
getNthFieldName(int) - Method in class norsys.netica.User
  getNthFieldName()node: user-defined fields net: user-defined fields user field: enumerating allReturns the fieldName of the indexth user-defined named field; used for iterating through the fieldNames.
getNumber(String) - Method in class norsys.netica.User
  getNumber()user-defined fields: retrievingReturns the user-defined Number associated with this fieldName, or UNDEF_DBL, if the field was never set.
getNumeric() - Method in class norsys.netica.State
  getNumeric()Returns the real value that has been previously associated with this discrete state (by calling setNumeric or `Node.setLevels`).
getNumStates() - Method in class norsys.netica.Node
  getNumStates()node: states states: number ofReturns the number of states that this node can take on, or zero if this node is a continuous node that hasn't been discretized.
getObject() - Method in class norsys.netica.NeticaEvent
  getObject()Returns the object that is associated with this event.
getObject(String) - Method in class norsys.netica.User
  getObject()user-defined fields: retrievingReturns the user-defined Object associated with this fieldName, or null, if the field was never set.
getParentNodePanel() - Method in class norsys.netica.gui.LinkGraphic
  Return the NodePanel that is nearest to the start end of this link.
getParents() - Method in class norsys.netica.Node
  getParents()link: detecting node: parents parent nodes: retrievingReturns a list of the parents of this node.
getPosition() - Method in class norsys.netica.VisualNode
  getPosition()coordinates of node location of node center of node node: visual position visual appearance: position of node position of nodeRetrieves as elements 0 and 1 respectively, the x,y coordinates of the center of this node, as it would appear in a visual display (e.g., in Netica Application).
getQuadraticLoss(Node) - Method in class norsys.netica.NetTester
  getQuadraticLoss()MOAC - mean over all cases NetTester: quadratic loss quadratic loss Brier scoreReturns the "quadratic loss" of node under the tests previously performed.
getReal() - Method in class norsys.netica.Value
  getReal()finding: retrieving positive finding, real-valued: retrieving real-valued finding: retrievingReturns the real-valued finding entered for this node, or UNDEF_DBL if none has been entered since the last retraction (call to clear).
getRealFuncTable(int[], double[]) - Method in class norsys.netica.Node
  getRealFuncTable() UNDEF_DBL node: function table tables: retrieving tables: function function table: retrievingGets the real value of this node as a function of its parent nodes.
getReference() - Method in class norsys.netica.User
  getReference()net: user-defined data node: user-defined data user-defined dataReturns a reference to information previously attached to this object using setReference, or null if none has been attached.
getRelatedNodes(NodeList, String) - Method in class norsys.netica.Node
  getRelatedNodes()graph algorithms link: connectivity d-separation algorithm ancestor nodes: finding descendent nodes: finding connected nodes: finding Markov blanket nodes: finding d-connected nodes: finding parent nodes: retrieving child nodes: retrieving append - lists of nodes union - sets of nodes intersection - sets of nodes subtract - sets of nodes include_evidence_nodes, passed to getRelatedNodes exclude_self, passed to getRelatedNodesFinds all the Nodes that bear the relationship relation with this node and puts them in relatedNodes.
getRelatedNodes(NodeList, String, NodeList) - Method in class norsys.netica.Net
  getRelatedNodes()graph algorithmsFinds all the Nodes that bear the relationship relation with any member of nodeList and puts them in relatedNodes.
getSeverity() - Method in class norsys.netica.NeticaError
  getSeverity()error severity error reporting: getting severity of NOTHING_ERR REPORT_ERR NOTICE_ERR WARNING_ERR ERROR_ERR XXX_ERR severity level of errorReturns the severity level of this error (one of NOTHING_ERR, REPORT_ERR, NOTICE_ERR, WARNING_ERR, ERROR_ERR, or XXX_ERR).
getStartPoint() - Method in class norsys.netica.gui.LinkGraphic
  Gets the startpoint (non-arrowhead end) of the link.
getState() - Method in class norsys.netica.Value
  getState()finding: retrieving positive finding: retrievingGets the state finding entered for this (discrete or discretized) node.
getState() - Method in class norsys.netica.gui.NodePanel_BeliefBarsRow
  NodePanel_BeliefBarsRow.getState().header
getState() - Method in class norsys.netica.gui.NodePanel_BeliefBarRow
  NodePanel_BeliefBarRow.getState().header
getState(String) - Method in class norsys.netica.RandomGenerator
  getState()Returns a string that can be used as a seed to RandomGenerator to create a random generator that will produce exactly the same pseudo-random results as this one will.
getStateFuncTable(int[], int[]) - Method in class norsys.netica.Node
  getStateFuncTable() UNDEF_STATE node: function table tables: retrieving tables: function function table: retrievingGets the state value of this node as a function of its parent nodes.
getString(String) - Method in class norsys.netica.User
  getString()user-defined fields: retrievingReturns the user-defined String associated with this fieldName, or null, if the field was never set.
getStroke() - Method in class norsys.netica.gui.LinkGraphic
  Returns the java.awt.Stroke used for drawing the line portion (body) of the link.
getStyle() - Method in class norsys.netica.VisualNode
  getStyle()node: visual style visual appearance: style of node style of nodeReturns the current "style descriptor" of this node for any visual display (e.g., in Netica Application, or within a NetPanel).
getStyle() - Method in class norsys.netica.gui.NodePanel
  Returns the display style of this NodePanel.
getTitle() - Method in class norsys.netica.General
  getTitle()net: title node: title state: title title of net, node, or stateGets the unrestricted label of this object.
getType() - Method in class norsys.netica.Node
  getType()node type node: type type of node discrete continuous DISCRETE_TYPE CONTINUOUS_TYPEReturns DISCRETE_TYPE if the variable corresponding to this node is discrete (digital), and CONTINUOUS_TYPE if it is continuous (analog).
getValueEntered() - Method in class norsys.netica.Node
  Deprecated. use `finding().getReal()` instead.
getVarianceOfReal(Node) - Method in class norsys.netica.Sensitivity
  getVarianceOfReal()expected value: sensitivity expected decrease in variance variance of a node Sensitivity: for variance variance reductionMeasures how much a finding at one node (called the "varying node") is expected to reduce the variance of another node (called the "query node").
getVersion() - Method in class norsys.netica.Environ
  getVersion()Environ: getting version info version of NeticaReturns the version number of Netica, multiplied by 100.
getVersionString() - Method in class norsys.netica.Environ
  getVersionString()Returns a String consisting of the full version number, a space, a code for the type of machine or OS it is running on, a comma, the name of the program, and finally a code indicating some build information (in parentheses).
getWarnings(int, Environ) - Static method in class norsys.netica.NeticaError
  getWarnings()Returns a vector of all the NeticaErrors in env that are at the severity level severity or higher.
GRADIENT_DESCENT_LEARNING - Static variable in class norsys.netica.Learner
  GRADIENT_DESCENT_LEARNING GRADIENT_DESCENT_LEARNINGIndicates the Gradient Descent learning algorithm.
grayedModeBGColor - Static variable in class norsys.netica.gui.NodePanel
  A color to use for signaling that this NodePanel is in "grayed out" mode ( see `setDisplayMode(DISPLAY_MODE_GRAYED)`).
grayedModeColor - Static variable in class norsys.netica.gui.LinkGraphic
  A color to use for signaling that this LinkGraphic is in "grayed out" mode ( see `setDisplayMode(DISPLAY_MODE_GRAYED)`).

## H

hasTable(boolean[]) - Method in class norsys.netica.Node
  hasTable()CPT table: test if present node: tables tables: test if presentReturns true if this node has a function table or a CPT table, otherwise false.
hilitedModeBGColor - Static variable in class norsys.netica.gui.NodePanel
  A color to use for signaling that this NodePanel is in "hilited" mode ( see `setDisplayMode(DISPLAY_MODE_HILITED)`).
hilitedModeColor - Static variable in class norsys.netica.gui.LinkGraphic
  A color to use for signaling that this LinkGraphic is in "hilited" mode ( see `setDisplayMode(DISPLAY_MODE_HILITED)`).

## I

IMPOSS_STATE - Static variable in class norsys.netica.Node
  Deprecated. use State.IMPOSS_STATE
IMPOSS_STATE - Static variable in class norsys.netica.State
  IMPOSS_STATE IMPOSS_STATEIndicates that the state value is irrelevant, because it is for a condition that will never occur.
INCONS_FINDING_CND - Static variable in class norsys.netica.NeticaError
  INCONS_FINDING_CND INCONS_FINDING_CNDAn inconsistent finding was entered into a Node.
INFINITY - Static variable in class norsys.netica.Environ
  INFINITY INFINITYThe number used to represent an infinite numeric value; the negative of this number represents negative infinity.
insertFindings(NodeList, String, String, String) - Method in class norsys.netica.DatabaseManager
  insertFindings()findings: putting in database case: putting in database DatabaseManager: filling DB database: populating from findings INSERT SQL command SQL commands: INSERT DatabaseManager: in use DatabaseManager: in use insertFindings: in use enterFindingNot: in useCreates a new record in the database dbMgr consisting of the current findings.
INTERVAL_VALUE - Static variable in class norsys.netica.Value
  INTERVAL_VALUE INTERVAL_VALUEThis node's continuous random variable is within a range of possible values.
isAscii(String) - Static method in class norsys.netica.Util
  isAsciiReturns true, iff, the given string contains only ascii characters, that is, characters in the range 1..255, inclusive.
isBeliefUpdated() - Method in class norsys.netica.Node
  isBeliefUpdated()updating: test if done belief updating: test if done propogation: test if doneWhether the beliefs for this node have already been calculated (by belief propagation).
isDeterministic() - Method in class norsys.netica.Node
  isDeterministic()CPT table: test if deterministic node: tables tables: test if deterministic function table: test deterministic testWhether the value of this node, given its parents, is deterministic (versus probabilistic).
isInCategory(int) - Method in class norsys.netica.NeticaError
  isInCategory()error condition (NeticaError)error reporting: getting category of category of error OUT_OF_MEMORY_CND INCONS_FINDING_CND USER_ABORTED_CND FROM_DEVELOPER_CND FROM_WRAPPER_CNDReturns a boolean to indicate whether this error was caused by the condition errcnd.
isInNodeset(String) - Method in class norsys.netica.Node
  isInNodeset()node-set: membership testing membership in node-setReturns whether this node is a member of nodeset.
isNear(Point) - Method in class norsys.netica.gui.LinkGraphic
  Returns true if point is within LINK_CLICK_DISTANCE_TOLERANCE pixels of the nearest point on this LinkGraphic.
isRelated(String, Node) - Method in class norsys.netica.Node
  isRelated()graph algorithms ancestor nodes: testing for descendent nodes: testing for connected nodes: testing for Markov blanket nodes: testing for d-connected nodes: testing for parent nodes: testing for child nodes: testing for Tests whether this node bears the relationship relation with otherNode.

## J

JOIN_TREE_SAMPLING - Static variable in class norsys.netica.Net
  JOIN_TREE_SAMPLING JOIN_TREE_SAMPLINGA sampling method used by generateRandomCase.

## L

learnCPTs(NodeList, Caseset, double) - Method in class norsys.netica.Learner
  learnCPTs()degree of cases case-set: learning from back-propagation algorithm case file: learning CPTs from Learner: activating Caseset: learning CPTs from tables: learning CPT table: learning learning algorithms counting learning EM learning gradient descent learningPerforms learning of CPT tables from data.
Learner - class norsys.netica.Learner.
  An object for managing batch-mode learning, such as EM or Gradient Descent learning, of CPTs from case data.
Learner(int) - Constructor for class norsys.netica.Learner
  Learner()Creates and returns a new Learner object for use in learning of CPTs from case data, and associates it with the default Netica environment.
Learner(int, String, Environ) - Constructor for class norsys.netica.Learner
  Learner()learning method Learner: creating learning from data EM_LEARNING GRADIENT_DESCENT_LEARNING COUNTING_LEARNINGCreates and returns a new Learner object for use in learning of CPTs from case data, and associates it with a given Netica environment.
LIKELIHOOD_FINDING - Static variable in class norsys.netica.Node
  Deprecated. use `Value.LIKELIHOOD_VALUE` instead.
LIKELIHOOD_VALUE - Static variable in class norsys.netica.Value
  LIKELIHOOD_VALUE LIKELIHOOD_VALUEThis (discrete or discretized) node's random variable abides by a likelihood distribution.
LINK_CLICK_DISTANCE_TOLERANCE - Static variable in class norsys.netica.gui.LinkGraphic
  LINK_CLICK_DISTANCE_TOLERANCEControls the threshold used by isNear.
LINK_DEFAULT_ARROW_HEAD_LENGTH - Static variable in class norsys.netica.gui.LinkGraphic
  Used to set the length of the triangle forming a link arrow's head.
LINK_DEFAULT_ARROW_HEAD_WIDTH - Static variable in class norsys.netica.gui.LinkGraphic
  Used to set the width of the triangle forming a link arrow's head.
LINK_POLICY_ABOVE - Static variable in class norsys.netica.gui.NetPanel
  LINK_POLICY_ABOVEDisplay the net's links, such that, should they overlap any NodePanels, the links appear above the nodes.
LINK_POLICY_BELOW - Static variable in class norsys.netica.gui.NetPanel
  LINK_POLICY_BELOWDisplay the net's links, such that, should they overlap any NodePanels, the nodes appear above the links.
LINK_POLICY_NONE - Static variable in class norsys.netica.gui.NetPanel
  LINK_POLICY_NONEDo not display the net's links.
LinkGraphic - class norsys.netica.gui.LinkGraphic.
  A java.awt.Component for displaying a link (arrow) between two NodePanels.
LinkGraphic(Container, NodePanel, NodePanel) - Constructor for class norsys.netica.gui.LinkGraphic
  public constructors

## M

mapStateList(int[], NodeList, NodeList) - Static method in class norsys.netica.NodeList
  mapStateList()NodeList: mapping state valuesReturns an array of states, the same states that are in the srcStates array, except in a different order.
MAX_STATES_DISPLAYED - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  A limit on the number of states that are displayed.
MAX_STATES_DISPLAYED - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  A limit on the number of states that are displayed.
maxWidth - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
  The maximum width in pixels of these panels.
maxWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  The maximum width in pixels of these panels.
maxWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  The maximum width in pixels of these panels.
minWidth - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
  The minimum width in pixels of these panels.
minWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
  The minimum width in pixels of these panels.
minWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
  The minimum width in pixels of these panels.
mouseClicked(MouseEvent) - Method in class norsys.netica.gui.LinkGraphic
  Informs all listeners of the click (press and release) event, provided this LinkGraphic is enabled and the mouse was pressed sufficiently near to the link.
mouseEntered(MouseEvent) - Method in class norsys.netica.gui.LinkGraphic
  Satisfies MouseListener interface; does nothing (has empty implementation body).
mouseExited(MouseEvent) - Method in class norsys.netica.gui.LinkGraphic
  Satisfies MouseListener interface; does nothing (has empty implementation body).
mousePressed(MouseEvent) - Method in class norsys.netica.gui.LinkGraphic
  Informs all listeners of the press event, provided this LinkGraphic is enabled and the mouse was pressed sufficiently near to the link.
mouseReleased(MouseEvent) - Method in class norsys.netica.gui.LinkGraphic
  Informs all listeners of the release event, provided this LinkGraphic is enabled and the mouse was pressed sufficiently near to the link.
moveBy(int, int) - Method in class norsys.netica.gui.NodePanel
  Move this panel by a fixed displacement.

## N

NAME_MAX - Static variable in class norsys.netica.General
  NAME_MAX NAME_MAXThe maximum number of characters in the name of a General Netica object (e.g., Node, Net, State).
NATURE_NODE - Static variable in class norsys.netica.Node
  NATURE_NODE NATURE_NODEThe value of this node is determined by nature (also known as a "chance" or "deterministic" node).
NEGATIVE_FINDING - Static variable in class norsys.netica.Node
  Deprecated. use `Value.STATE_NOT_VALUE` instead.
Net - class norsys.netica.Net.
  A Bayesian belief network or decision network.
Net() - Constructor for class norsys.netica.Net
  Net()Creates and returns a new net, initially having no nodes, and places it in the current default Environ (see getDefaultEnviron).
Net(Environ) - Constructor for class norsys.netica.Net
  Net()net: creating NAME_MAX name: of netCreates and returns a new net, initially having no nodes.
Net(Net, String, Environ, String) - Constructor for class norsys.netica.Net
  Net() NAME_MAX name: of net copy net duplicating a net net: duplicatingNet copy-constructor.
Net(Streamer) - Constructor for class norsys.netica.Net
  Net()Streamer: reading net from net: reading from fileReads a net from inStream, and returns the new net read, or throws a Netica Exception, if reading was impossible.
NeticaError - class norsys.netica.NeticaError.
  A class that holds information on errors that occurred while Netica was attempting some operation (which become part of the NeticaException thrown), or on warnings or other status reports of successful Netica operations.
NeticaEvent - class norsys.netica.NeticaEvent.
  Information describing an event which occurred within Netica.
NeticaException - exception norsys.netica.NeticaException.
  A java.lang.Exception that holds extra information when Netica reports an error for some attempted operation.
NeticaException(int, String) - Constructor for class norsys.netica.NeticaException
  NeticaException()Constructs a numbered NeticaException with the given error message.
NeticaException(String) - Constructor for class norsys.netica.NeticaException
  NeticaException()Constructs a generic NeticaException with the given error message.
NeticaListener - interface norsys.netica.NeticaListener.
  An interface that all classes which are to receive NeticaEvents must implement.
NetPanel - class norsys.netica.gui.NetPanel.
  A javax.swing.JPanel for displaying a net.
NetPanel(Net, int) - Constructor for class norsys.netica.gui.NetPanel
  Creates a new NetPanel for displaying the given net.
NetTester - class norsys.netica.NetTester.
  A tool for grading a Bayes net by using a set of real cases to see how well the predictions or diagnosis of the net match the actual cases.
NetTester(NodeList, NodeList, int) - Constructor for class norsys.netica.NetTester
  NetTester()grading a Bayes net prediction: testing diagnosis: testing NetTester: creating net: testing performance performance testing testing performance of net NetTester: in use testWithCaseset: in use PrintConfusionMatrix: in use getConfusion: in use getErrorRate: in use getLogLoss: in use finalize: in useCreates a NetTester which is a tool for grading a Bayes net, using a set of real cases to see how well the predictions or diagnosis of the net match the actual cases.
NEXT_CASE - Static variable in class norsys.netica.Net
  NEXT_CASE NEXT_CASEPass this to read the case following the last case read.
NO_CHECK - Static variable in class norsys.netica.Environ
  NO_CHECK NO_CHECKTurns off all argument checking.
NO_FINDING - Static variable in class norsys.netica.Node
  Deprecated. use `Value.NO_VALUE` instead.
NO_MORE_CASES - Static variable in class norsys.netica.Net
  NO_MORE_CASES NO_MORE_CASESReturned by Netica when trying to read past the last case.
NO_VALUE - Static variable in class norsys.netica.Value
  NO_VALUE NO_VALUEThere is no information on the range of values this node can adopt.
Node - class norsys.netica.Node.
  A node (object which represents a variable) in a Net (Bayesian belief network or decision network).
NODE_STYLE_ABSENT - Static variable in class norsys.netica.gui.NodePanel
  NODE_STYLE_ABSENTDisplay the node as empty space.
NODE_STYLE_AUTO_SELECT - Static variable in class norsys.netica.gui.NodePanel
  NODE_STYLE_AUTO_SELECTDisplay the node using a style that seems appropriate.
NODE_STYLE_BELIEF_BARS - Static variable in class norsys.netica.gui.NodePanel
  NODE_STYLE_BELIEF_BARSDisplay the node similar to the Belief Bars Style in Netica Application.
NODE_STYLE_CIRCLE - Static variable in class norsys.netica.gui.NodePanel
  NODE_STYLE_CIRCLEDisplay the node as a circle or hexagon (Utility nodes).
NODE_STYLE_LABELED_BOX - Static variable in class norsys.netica.gui.NodePanel
  NODE_STYLE_LABELED_BOXDisplay the node titles only, in rounded boxes.
NODE_STYLE_TEXT - Static variable in class norsys.netica.gui.NodePanel
  NODE_STYLE_TEXTDisplay the node titles only.
Node() - Constructor for class norsys.netica.Node
  Node()Default constructor - do not call this constructor directly.
Node(String, int, Net) - Constructor for class norsys.netica.Node
  Node()net: adding nodes NAME_MAX node: creating discrete continuousCreates and returns a new node for net.
Node(String, String, Net) - Constructor for class norsys.netica.Node
  Node()Construct a node with the given name and state names, for the given Net.
NodeList - class norsys.netica.NodeList.
  A java.util.Vector that is meant to store only Nodes from a single Net.
NodeList(Net) - Constructor for class norsys.netica.NodeList
  NodeList()Constructs an empty NodeList of initial capacity 100.
NodeList(NodeList) - Constructor for class norsys.netica.NodeList
  NodeList()Copy constructs a new NodeList from an existing NodeList.
NodePanel - class norsys.netica.gui.NodePanel.
  An abstract base class used for constucting classes that are different styles of NodePanel.
NodePanel_BeliefBar - class norsys.netica.gui.NodePanel_BeliefBar.
  A javax.swing.JPanel for displaying a Nature Node's Beliefs, or a Utility node's Expected Utilities.
NodePanel_BeliefBar(Node) - Constructor for class norsys.netica.gui.NodePanel_BeliefBar
  NodePanel_BeliefBar.NodePanel_BeliefBar().header
NodePanel_BeliefBarRow - class norsys.netica.gui.NodePanel_BeliefBarRow.
  A javax.swing.JPanel for displaying the state information in a NodePanel_BeliefBar.
NodePanel_BeliefBarRow(NodePanel_BeliefBar, State) - Constructor for class norsys.netica.gui.NodePanel_BeliefBarRow
  NodePanel_BeliefBarRow.NodePanel_BeliefBarRow().header
NodePanel_BeliefBars - class norsys.netica.gui.NodePanel_BeliefBars.
  A javax.swing.JPanel for displaying a Nature Node's Beliefs, or a Utility node's Expected Utilities.
NodePanel_BeliefBars(Node) - Constructor for class norsys.netica.gui.NodePanel_BeliefBars
  NodePanel_BeliefBars.NodePanel_BeliefBars().header
NodePanel_BeliefBarsRow - class norsys.netica.gui.NodePanel_BeliefBarsRow.
  A javax.swing.JPanel for displaying the state information in a NodePanel_BeliefBars.
NodePanel_BeliefBarsRow(NodePanel_BeliefBars, State) - Constructor for class norsys.netica.gui.NodePanel_BeliefBarsRow
  NodePanel_BeliefBarsRow.NodePanel_BeliefBarsRow().header
NodePanel_Circle - class norsys.netica.gui.NodePanel_Circle.
  A javax.swing.JPanel for displaying a Node as a simple geometric shape.
NodePanel_Circle(Node) - Constructor for class norsys.netica.gui.NodePanel_Circle
  NodePanel_Circle.NodePanel_Circle().header
NodePanel_LabeledBox - class norsys.netica.gui.NodePanel_LabeledBox.
  A javax.swing.JPanel for displaying a Node as its title in either a rounded rectangle (Nature nodes) or elongated hexagon (Utility nodes) (see `Node.getKind`).
NodePanel_LabeledBox(Node) - Constructor for class norsys.netica.gui.NodePanel_LabeledBox
NodePanel_Text - class norsys.netica.gui.NodePanel_Text.
  A javax.swing.JPanel for displaying a Node by simply its title.
NodePanel_Text(Node) - Constructor for class norsys.netica.gui.NodePanel_Text
nodeTitleJLabel - Variable in class norsys.netica.gui.NodePanel
  The title Component, if this NodePanel displays a title, otherwise null.
norsys.netica - package norsys.netica
norsys.netica.gui - package norsys.netica.gui
NOTHING_ERR - Static variable in class norsys.netica.NeticaError
  NOTHING_ERR NOTHING_ERRNot anything.
NOTICE_ERR - Static variable in class norsys.netica.NeticaError
  NOTICE_ERR NOTICE_ERRNotice of something unusual.

## O

OUT_OF_MEMORY_CND - Static variable in class norsys.netica.NeticaError
  OUT_OF_MEMORY_CND OUT_OF_MEMORY_CNDSystem did not have enough memory to complete operation.

## P

paint(Graphics) - Method in class norsys.netica.gui.LinkGraphic
paintComponent(Graphics) - Method in class norsys.netica.gui.NodePanel
  Overrides javax.swing.JComponent.paintComponent().
paintComponent(Graphics) - Method in class norsys.netica.gui.NodePanel_LabeledBox
paintComponent(Graphics) - Method in class norsys.netica.gui.NodePanel_BeliefBars
paintComponent(Graphics) - Method in class norsys.netica.gui.NetPanel
  Overrides javax.swing.JComponent.paintComponent() to draw link arrows on this JPanel.
paintComponent(Graphics) - Method in class norsys.netica.gui.NodePanel_BeliefBar
paintComponent(Graphics) - Method in class norsys.netica.gui.NodePanel_Circle
parentStatesToIndexes(String) - Method in class norsys.netica.Node
  parentStatesToIndexes()Utility to convert a comma and/or space delimited string of parent state names for this node to an array of state indexes.
probabilitiesFormat - Static variable in class norsys.netica.gui.NodePanel
  probabilitiesFormatUsed to control the format of any probabilities displayed by this NodePanel.
PROBABILITY_FORMAT_1 - Static variable in class norsys.netica.gui.NodePanel
  Used to display probabilities with no decimal place and a trailing "%" symbol.
PROBABILITY_FORMAT_2 - Static variable in class norsys.netica.gui.NodePanel
  Used to display probabilities as percentages, but without the "%" symbol, and with one decimal place.
PROBABILITY_FORMAT_3 - Static variable in class norsys.netica.gui.NodePanel
  Used to display probabilities as floats between 0.0 and 1.0, with two decimal places.
PROBABILITY_FORMAT_4 - Static variable in class norsys.netica.gui.NodePanel
  Used to display probabilities as floats between 0.00 and 1.00, with three decimal places.

## Q

QUICK_CHECK - Static variable in class norsys.netica.Environ
  QUICK_CHECK QUICK_CHECKOnly does argument checking that can be done very quickly.

## R

RandomGenerator - class norsys.netica.RandomGenerator.
  A class that manages the generation of random numbers.
RandomGenerator(String, Environ, String) - Constructor for class norsys.netica.RandomGenerator
  RandomGenerator()Creates a new object to control the randomized aspects of Netica, or generate pseudo-random numbers.
readCase(long[], Streamer, NodeList, long[], double[]) - Method in class norsys.netica.Net
  Deprecated. use `readFindings` instead.
readFindings(long[], Streamer, boolean, NodeList, long[], double[]) - Method in class norsys.netica.Net
  readFindings()text file as database findings: reading from file Caseset position (as long)Streamer: reading findings from case file: reading FIRST_CASE NEXT_CASE NO_MORE_CASESReads a set of findings (i.e., a case) from a file containing one or more cases.
readFindings(long[], Streamer, NodeList, long[], double[]) - Method in class norsys.netica.Net
  Deprecated.
REAL_SENSV - Static variable in class norsys.netica.Sensitivity
  REAL_SENSV REAL_SENSVMeasure the effect on the real numeric value (rather than just the state).
REAL_VALUE - Static variable in class norsys.netica.Value
  REAL_VALUE REAL_VALUEThis node's continuous random variable is precisely a single real number.
RecursingEventListener - interface norsys.netica.gui.RecursingEventListener.
  An interface that defines two methods, one which should add a mouseListener to this Component and all contained (recursively) Components for which mouse events may be listened for.
redoOperation(double) - Method in class norsys.netica.Net
  redoOperation()Call this to redo an operation that was undone by undoLastOperation.
refreshDataDisplayed() - Method in class norsys.netica.gui.NodePanel
refreshDataDisplayed() - Method in class norsys.netica.gui.NodePanel_BeliefBars
refreshDataDisplayed() - Method in class norsys.netica.gui.LinkGraphic
refreshDataDisplayed() - Method in class norsys.netica.gui.NetPanel
refreshDataDisplayed() - Method in interface norsys.netica.gui.DataDisplayer
  Refresh all the data in this graphical Component, so that it correctly represents the current state of the Netica object it represents.
refreshDataDisplayed() - Method in class norsys.netica.gui.NodePanel_BeliefBarsRow
refreshDataDisplayed() - Method in class norsys.netica.gui.NodePanel_BeliefBar
refreshDataDisplayed() - Method in class norsys.netica.gui.NodePanel_BeliefBarRow
REGULAR_CHECK - Static variable in class norsys.netica.Environ
  REGULAR_CHECK REGULAR_CHECKDoes argument checking suitable for software development, and final releases of your software where speed is not significant.
REMOVE_EVENT - Static variable in class norsys.netica.NeticaEvent
  REMOVE_EVENT REMOVE_EVENTIndicates an object is about to be removed from its owner, and shortly after that may be deleted.
remove(Component) - Method in class norsys.netica.gui.NetPanel
  Be sure to call super.remove(component), if you override this.
removeField(String) - Method in class norsys.netica.User
  removeField()Remove the user field named fieldName from this object.
removeFromNodeset(String) - Method in class norsys.netica.Node
  removeFromNodeset()node-set: removing nodeRemoves this node from the node-set named nodeset.
removeListener(NeticaListener) - Method in class norsys.netica.General
  removeListener()Removes the given listener from this object's list of listeners.
removeListenerFromAllComponents(EventListener) - Method in class norsys.netica.gui.NodePanel
removeListenerFromAllComponents(EventListener) - Method in interface norsys.netica.gui.RecursingEventListener
  Remove the given EventListener from this object and, if it is a Container, from all RecursingEventListeners it contains.
removeListenerFromAllComponents(EventListener) - Method in class norsys.netica.gui.NetPanel
reorderNodesets(String) - Method in class norsys.netica.Net
  reorderNodesets()node-set: ordering by priority priority order of node-sets order of node-sets color of node visual appearance: color of nodeThis rearranges the priority order of the node-sets of this net.
reorderStates(int[]) - Method in class norsys.netica.Node
  reorderStates()node: modifying states states: reorderingRearranges the order of the states so that state i is moved to position newOrder[i].
replaceNodePanel(NodePanel, NodePanel) - Method in class norsys.netica.gui.NetPanel
  Replace one NodePanel in this NetPanel with another one representing the same Node.
REPORT_ERR - Static variable in class norsys.netica.NeticaError
  REPORT_ERR REPORT_ERRNot an error, but a report of success.
reportJunctionTree() - Method in class norsys.netica.Net
  Deprecated. use @link #createCustomReport() instead.
retractFindings() - Method in class norsys.netica.Node
  Deprecated. use `finding().clear()` instead.
retractFindings() - Method in class norsys.netica.Net
  retractFindings()net: retracting all findings findings: retracting finding: retractingRetracts all findings (i.e., the current case) from all the nodes in this net, except "constant" nodes (use Node.finding().clear() for that).
reverseLink(Node) - Method in class norsys.netica.Node
  reverseLink()link: automatically added link: reversingReverses the link from parentNode to this child node, so that instead it goes from this node to parentNode.
reviseCPTsByCaseFile(Streamer, NodeList, double) - Method in class norsys.netica.Net
  reviseCPTsByCaseFile()degree of cases text file as database case file: learning CPTs from node: CPT table tables: learning CPT table: learning learning from dataRevises the CPTs of these nodes, to account for the cases in the given file.
reviseCPTsByFindings(NodeList, double) - Method in class norsys.netica.Net
  reviseCPTsByFindings()degree of cases findings: learning from node: CPT table tables: learning CPT table: learning learning from dataRevises the CPTs of these nodes, to account for the currently entered case.
rowsPanel - Variable in class norsys.netica.gui.NodePanel_BeliefBars
  The panel containing all the NodePanel_BeliefBarsRow objects, one for each state of this node.
rowsPanel - Variable in class norsys.netica.gui.NodePanel_BeliefBar
  The panel containing all the NodePanel_BeliefBarRow objects, one for each state of this node.

## S

Sensitivity - class norsys.netica.Sensitivity.
  A sensitivity measurer, which determines to what degree a new finding at one node is expected to affect the beliefs of a certain other node.
Sensitivity(Node, NodeList, int) - Constructor for class norsys.netica.Sensitivity
  Sensitivity()query node varying node target node utility-free value of information ENTROPY_SENSV REAL_SENSV VARIANCE_SENSV Sensitivity: creating sensitivity to findings Sensitivity: in use Sensitivity: in use ENTROPY_SENSV: in use finalize: in use sensitivity to findings value of information mutual information entropy reduction variance reductionCreates a sensitivity measuring object, which measures how much the beliefs at one node (called the "query node" or "target node") will change if a finding is entered at another node (called the "varying node").
setArgumentChecking(int) - Method in class norsys.netica.Environ
  setArgumentChecking()argument checking Environ: setting checking level debug mode checking arguments NO_CHECK QUICK_CHECK REGULAR_CHECK COMPLETE_CHECK QUERY_CHECKSets the level to which Netica checks all arguments you pass it (one of NO_CHECK, QUICK_CHECK, REGULAR_CHECK, COMPLETE_CHECK).
setArrowHeadLength(int) - Method in class norsys.netica.gui.LinkGraphic
  Sets the length of the arrow head.
setArrowHeadWidth(int) - Method in class norsys.netica.gui.LinkGraphic
  Sets the width of the arrow head.
setAutoUpdate(int) - Method in class norsys.netica.Net
  setAutoUpdate()net: auto-updating auto-updating time saving: auto-update BELIEF_UPDATE memory saving: auto-update speed enhance: auto-updateTurns auto-updating on or off.
setBytes(String, byte[]) - Method in class norsys.netica.User
  setBytes()user-defined fields: settingAttaches user-defined byte data to this object under category 'fieldName'.
setCaseFileDelimChar(char) - Method in class norsys.netica.Environ
  setCaseFileDelimChar()case file: separator char separator char: in case file tab chars in case file commas in case file delimeter character Environ: setting case file charsSets the symbol used to separate data fields in a case file being created by Netica.
setComment(String) - Method in class norsys.netica.General
  setComment()descriptive comment: for net, node, or state net: descriptive comment node: descriptive comment state: descriptive commentSets the documentation or a description of an object.
setConstructorClass(String) - Static method in class norsys.netica.Node
  setConstructorClass()Sets the classname that Netica-J will use to independently construct Nodes.
setConstructorClass(String) - Static method in class norsys.netica.Net
  Deprecated. use `env.setNetClass(class)` instead.
setCPTable(float[]) - Method in class norsys.netica.Node
  setCPTable()Sets the entire CPTable of this node in one call.
setCPTable(int[], float[]) - Method in class norsys.netica.Node
  setCPTable() WILDCARD_STATE probability (as float)node: tables tables: setting CPT table: setting EVERY_STATESets the probabilities for each state of this node, conditioned on its parent nodes.
setCPTable(String, float[]) - Method in class norsys.netica.Node
  setCPTable()This does the same as setCPTable(int[], float[]) except that it takes the parent states as a string rather than as an integer array.
setDisplayMode(int) - Method in class norsys.netica.gui.NodePanel
  Sets whether the node is displayed as grayed, normal, or hi-lited.
setDisplayMode(int) - Method in class norsys.netica.gui.LinkGraphic
  Sets whether the link is displayed as grayed, normal, or hi-lited.
setElimOrder(NodeList) - Method in class norsys.netica.Net
  setElimOrder()net: elimination orderSets an "Elimination order" of all the nodes in this net, used to guide compiling to find an efficient junction tree.
setEndPoint(Point) - Method in class norsys.netica.gui.LinkGraphic
  Sets the endpoint (arrowhead end) of the link, using Graphics coordinates.
setEquation(String) - Method in class norsys.netica.Node
  setEquation()node: equation equation: settingSets the equation giving the probability of this node conditioned on its parent nodes, or the value of this node as a function of its parents.
setExperTable(double) - Method in class norsys.netica.Node
  setExperTable() EVERY_STATESets the experience of this node as a function of its parent nodes.
setExperTable(int[], double) - Method in class norsys.netica.Node
  setExperTable() WILDCARD_STATE node: experience table tables: setting experience table: setting EVERY_STATESets the experience of this node as a function of its parent nodes.
setInputDelay(int, int, String) - Method in class norsys.netica.Node
  setInputDelay()node-set: input delaySets the "time" delay for a link of this dynamic Bayes net (DBN) to delay.
setInputName(int, String) - Method in class norsys.netica.Node
  setInputName() NAME_MAX node: input namesSets the name of this node's input (i.e., link).
setKind(int) - Method in class norsys.netica.Node
  setKind() NATURE_NODE DECISION_NODE UTILITY_NODE CONSTANT_NODE node kind node: kindSets whether this node is a nature, decision, utility or constant node.
setLevels(double[]) - Method in class norsys.netica.Node
  setLevels()interval node integer node continuous level of discretized node (as double)node: modifying states node: discretizing states: discretizing states: levels states: number of INFINITY levels list discretization real valueSets the levels list of this node to levels.
setLinkPolicy(int) - Method in class norsys.netica.gui.NetPanel
  Sets the policy for displaying links, that is, whether they appear above or below NodePanels, or not at all.
setMaxIterations(int) - Method in class norsys.netica.Learner
  setMaxIterations()maximum iterations during learning iterations, controling learning termination of learning algorithm Learner: termination conditionSets the maximum number of learning-step iterations (i.e., complete passes through the data) which will be done when learner is used, after which learning will be automatically terminated.
setMaxMemoryUsage(double) - Method in class norsys.netica.Environ
  Deprecated. use `setMemoryUsageLimit (maxMem)` instead.
setMaxTolerance(double) - Method in class norsys.netica.Learner
  setMaxTolerance()maximum tolerance during learning tolerance, controling learning termination of learning algorithm Learner: termination conditionSets the tolerance for the minimum change in data log likelihood between consecutive passes through the data, as a termination condition for any learning to be done by learner.
setMemoryUsageLimit(double) - Method in class norsys.netica.Environ
  setMemoryUsageLimit()Environ: limiting memory usage memory usage limitingCall this method anytime to adjust the amount of memory that Netica is permitted to allocate for tables.
setMissingDataChar(char) - Method in class norsys.netica.Environ
  setMissingDataChar()case file: missing data char* in case file? in case file missing data character Environ: setting case file charsSets the symbol to be used for indicating missing data fields in a case file created by Netica.
setName(String) - Method in class norsys.netica.General
  setName()net: name node: name state: name name: of net, node, or state NAME_MAXChanges the name of this object to be name.
setNetClass(Class) - Method in class norsys.netica.Environ
setNodeClass(Class) - Method in class norsys.netica.Environ
setNodesetColor(String, Color) - Method in class norsys.netica.Net
  setNodesetColor()Color color of node node: color node-set: coloring visual appearance: color of nodeThis sets the color of nodeset to color.
setNodeStyle(NodeList, int) - Method in class norsys.netica.gui.NetPanel
  Change the display mode style of all the nodes in nodeList to newStyle.
setNumber(String, double) - Method in class norsys.netica.User
  setNumber()user-defined fields: settingAttaches user-defined numeric data to this object under category 'fieldName'.
setNumeric(double) - Method in class norsys.netica.State
  setNumeric()Sets the real value to be associated with this discrete state.
setObject(String, Serializable) - Method in class norsys.netica.User
  setObject()user-defined fields: settingAttaches user-defined object data to this object under category 'fieldName'.
setPassword(String) - Method in class norsys.netica.Streamer
  setPassword().neta file format: in use Streamer: setting password Streamer: in use encryption encryption password for encryptionSets the password that Netica will use for either encrypting an output stream, or for decrypting an input stream.
setPersistance(int, String) - Method in class norsys.netica.Node
  setPersistance()node-set: input delaySets the time persistance for a node of a dynamic Bayes net (DBN), which is the maximum time it should hold its value before taking on a new one.
setPosition(double, double) - Method in class norsys.netica.VisualNode
  setPosition()coordinates of node location of node center of node move node on diagram node: visual position visual appearance: position of node position of nodeMoves this node so that its center is at coordinates (x, y), for any visual display (e.g., in Netica Application).
setRandomGenerator(RandomGenerator, boolean) - Method in class norsys.netica.Net
  setRandomGenerator()Associates a random generator randomGenerator with this net, so that all operations on this net that require randomness will use randomGenerator (unless overridden by another generator, as described in documentation for the particular function being used).
setReal(double) - Method in class norsys.netica.Value
  setReal()Same as enterReal(double), only it first clears the node's value (by calling clear).
setRealFuncTable(int[], double) - Method in class norsys.netica.Node
  setRealFuncTable()utility tables WILDCARD_STATE node: function table tables: setting function table: setting EVERY_STATESets the real value of this (continuous) deterministic node as a function of its parent nodes.
setReference(Object) - Method in class norsys.netica.User
  setReference()user-defined fields: settingAttaches an arbitrary data object to this User object.
setStartPoint(Point) - Method in class norsys.netica.gui.LinkGraphic
  Sets the startpoint (non-arrowhead end) of the link, using Graphics coordinates.
setState(int) - Method in class norsys.netica.Value
  setState()finding: entering positive finding: enteringSame as enterState only it first clears the value (by calling clear).
setState(String) - Method in class norsys.netica.Value
  setState()Same as enterState(String), only it first clears the node's value (by calling clear).
setStateFuncTable(int[], int) - Method in class norsys.netica.Node
  setStateFuncTable() WILDCARD_STATE node: function table tables: setting function table: setting EVERY_STATESets the state value of this (discrete or discretized) deterministic node as a function of its parent nodes.
setStateNames(String) - Method in class norsys.netica.Node
  setStateNames()Names the states of this node using the list of names names.
setString(String, String) - Method in class norsys.netica.User
  setString()user-defined fields: settingAttaches user-defined text data to this object under category 'fieldName'.
setStroke(Stroke) - Method in class norsys.netica.gui.LinkGraphic
  Sets the java.awt.Stroke used for drawing the line portion (body) of the link.
setStyle(String) - Method in class norsys.netica.VisualNode
  setStyle()Default node style Absent node style Shape node style LabeledBox node style BeliefBars node style BeliefLine node style Meter node style node: visual style visual appearance: style of node style of nodeSets the style of this node for any visual display (e.g., in Netica Application, or within a NetPanel).
setSubnet(NodeList) - Method in class norsys.netica.gui.NetPanel
  Display only those nodes in nodeList.
setTitle(String) - Method in class norsys.netica.General
  setTitle()net: title node: title state: titleSets the title of this object to the unrestricted string title.
setupPanel() - Method in class norsys.netica.gui.NodePanel
  Create subcomponents of this NodePanel and add them to this Container.
setupPanel() - Method in class norsys.netica.gui.NodePanel_LabeledBox
setupPanel() - Method in class norsys.netica.gui.NodePanel_BeliefBars
setupPanel() - Method in class norsys.netica.gui.NodePanel_BeliefBar
setupPanel() - Method in class norsys.netica.gui.NodePanel_Text
setupPanel() - Method in class norsys.netica.gui.NodePanel_Circle
sizeCompiled() - Method in class norsys.netica.Net
  sizeCompiled()junction tree: size net: size compiled memory required speed of inference compile net: size resulting size of junction tree speed of inferenceReturns the total size of the internal structure created by compiling a net (i.e., the junction tree, including sepsets), considering the findings currently entered.
State - class norsys.netica.State.
  A state of a discrete Node, or a state of a discretized continuous Node.
STATE_NOT_VALUE - Static variable in class norsys.netica.Value
  STATE_NOT_VALUE STATE_NOT_VALUEThis (discrete or discretized) node is not in one or more of its possible states, and could be in at least two states.
STATE_VALUE - Static variable in class norsys.netica.Value
  STATE_VALUE STATE_VALUEThis (discrete or discretized) node is in precisely a single one of its states.
state(int) - Method in class norsys.netica.Node
  state()Returns a state of this node.
state(String) - Method in class norsys.netica.Node
  state()Returns a state of this node.
stateNameLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBarsRow
  The state name JLabel Component.
stateNameLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBarRow
  The state name JLabel Component.
stateValueLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBarsRow
  The state value JLabel Component.
stateValueLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBarRow
  The state value JLabel Component.
Streamer - class norsys.netica.Streamer.
  An I/O handle to a file (for reading, writing, etc.).
Streamer(InputStream, String, Environ) - Constructor for class norsys.netica.Streamer
  Streamer()Constructs a Norsys stream from a java.io.InputStream.
Streamer(OutputStream, String, Environ) - Constructor for class norsys.netica.Streamer
  Streamer()Constructs a Norsys stream from a java.io.OutputStream.
Streamer(String) - Constructor for class norsys.netica.Streamer
  Streamer()Constructs a Norsys stream for the file with name filename, in the current default Environ (see getDefaultEnviron).
Streamer(String, Environ) - Constructor for class norsys.netica.Streamer
  Streamer()Streamer: creatingConstructs a Norsys stream for the file with name filename.
switchParent(int, Node) - Method in class norsys.netica.Node
  switchParent()disconnected link: connecting node: parentsSwitches the parent of the identified link with newParent.

## T

testWithCaseset(Caseset) - Method in class norsys.netica.NetTester
  testWithCaseset()NumCases column in case file NetTester: doing testsScans through the case data in caseset to do a number of performance tests on a Bayes net (specified when creating the this NetTester).
TEXT_TYPE - Static variable in class norsys.netica.Node
  TEXT_TYPE TEXT_TYPEA future type of Node, one used for holding or rendering text.
toDoubles(float[]) - Static method in class norsys.netica.Util
  toDoubles()Converts a float array to a double array.
toFloats(double[]) - Static method in class norsys.netica.Util
  toFloats()Converts a double array to a float array.
toString() - Method in class norsys.netica.NeticaError
  toString()Returns a readable string representation of this error.
toString() - Method in class norsys.netica.General
  toString()Returns the value of getName.
toString() - Method in class norsys.netica.gui.LinkGraphic
  Returns a compact description of the link.

## U

uncompile() - Method in class norsys.netica.Net
  uncompile()memory saving: uncompiling decompile net junction tree: deleting compile net: uncompiling net: uncompilingReleases the resources (e.g., memory) used by a compiled net.
UNDEF_DBL - Static variable in class norsys.netica.Environ
  UNDEF_DBL UNDEF_DBLThe number used to represent unknown or nonexistent numeric values.
UNDEF_STATE - Static variable in class norsys.netica.Node
  Deprecated. use State.UNDEF_STATE
UNDEF_STATE - Static variable in class norsys.netica.State
  UNDEF_STATE UNDEF_STATEIndicates that the state value is unknown or nonexistent.
undoLastOperation(double) - Method in class norsys.netica.Net
  undoLastOperation()node: undoing change net: undoing change reversing net operation error recovery: reversing operations atomic operations: undoingUndoes the last operation done to this net (or any node in it), leaving the net in the same state as it was before the operation was done.
User - class norsys.netica.User.
  A class that provides facilities for defining and retrieving arbitrary user-defined data.
USER_ABORTED_CND - Static variable in class norsys.netica.NeticaError
  USER_ABORTED_CND USER_ABORTED_CNDUser halted the method before it completed (not possible when using a Netica API version without the user interface).
user() - Method in class norsys.netica.General
  user()Retrieve the User object that stores user controlled data associated with this object.
Util - class norsys.netica.Util.
  A collection of static methods of general use to Java developers.
UTILITY_NODE - Static variable in class norsys.netica.Node
  UTILITY_NODE UTILITY_NODEThis node specifies the agent's desires; its expected value will be maximized.

## V

Value - class norsys.netica.Value.
  The Value object is used to set a variable (node) to a certain value, or to provide uncertain information on the value.
VARIANCE_OF_REAL_SENSV - Static variable in class norsys.netica.Sensitivity
  VARIANCE_OF_REAL_SENSV VARIANCE_OF_REAL_SENSVMeasure variance or mean squared change on the real numeric value (rather than just the state).
VARIANCE_SENSV - Static variable in class norsys.netica.Sensitivity
  VARIANCE_SENSV VARIANCE_SENSVMeasure variance or mean squared change.
visual() - Method in class norsys.netica.Node
  visual()Return the VisualNode object which can be used to control the visual display of this node in Netica Application.
VisualNode - class norsys.netica.VisualNode.
  An object representing the visual aspects of a Netica Node as it would be displayed in the Netica Application.

## W

WARNING_ERR - Static variable in class norsys.netica.NeticaError
  WARNING_ERR WARNING_ERREvent occurred at "warning" level - safe to proceed (e.g., user error, recovered okay).
write(Streamer) - Method in class norsys.netica.Net
  write().neta file format.dne/.dnet file format net: writing to file Streamer: writing toWrites this net to a stream specified by outStream.
writeCase(NodeList, Streamer, long, double) - Method in class norsys.netica.Net
  Deprecated. use `writeFindings` instead. Note that the order of the parameters has changed to be consistent with that for `readFindings`.
writeCases(Streamer, String) - Method in class norsys.netica.Caseset
  writeCases()case file: creating Caseset: writing to file Streamer: writing toWrites all the cases within this Caseset to outStream.
writeFindings(Streamer, NodeList, long, double) - Method in class norsys.netica.Net
  writeFindings()findings: writing to file net: writing findings to file Streamer: writing to Caseset position (as long)case file: creatingSaves in file the set of findings currently entered in nodeList, so that later they can be read back with readFindings.

## X

XXX_ERR - Static variable in class norsys.netica.NeticaError
  XXX_ERR XXX_ERRInternal error, things left inconsistent - continuing could crash system.

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