Overview  Package  Class  Tree  Deprecated   Index  Help 
 PREV   NEXT FRAMES    NO FRAMES
A B C D E F G H I J L M N O P Q R S T U V W X

A

absorb(NodeList) - Method in class norsys.netica.Net
Deprecated. renamed to use absorbNodes for clarity.
absorbNodes(NodeList) - Method in class norsys.netica.Net
absorbNodes()node:  absorbingabsorbing nodeslink:  automatically addedremove nodesumming out a variablemaxing out a variableAbsorbs the passed nodes, so that they are removed from the net, but the net's overall joint probability distribution for the remaining nodes is unchanged.
action() - Method in class norsys.netica.Node
 
addCases(DatabaseManager, double, NodeList, String, String, String, String) - Method in class norsys.netica.Caseset
addCases()degree of casesCaseset:  in usefindings:  getting from databasecase:  getting from databaseDatabaseManager:  making case-setCaseset:  getting from databasedatabase:  getting cases fromSELECT SQL commandSQL commands:  SELECTaddCases:  in useDatabaseManager:  in useCaseset:  in useDatabaseManager:  in useLearner:  in useLearner:  in use EM_LEARNING:  in uselearnCPTs:  in useSearches the database attached to dbMgr for cases to add to this caseset.
addCases(Streamer, double, String) - Method in class norsys.netica.Caseset
addCases()degree of casescase file:  readingCaseset:  adding case file toStreamer:  adding to case-setIndicates that all the cases within inStream should be added to this caseset.
addLink(Node) - Method in class norsys.netica.Node
addLink()link:  addingadd parentparent nodes:  adding toAdds a link from parentNode to this node, and returns the index of the added link.
addListener(NeticaListener) - Method in class norsys.netica.General
addListener()Adds the given listener to this object's list of listeners.
addListenerToAllComponents(EventListener) - Method in class norsys.netica.gui.NodePanel
 
addListenerToAllComponents(EventListener) - Method in interface norsys.netica.gui.RecursingEventListener
Add the given EventListener to this object and, if it is a Container, to all RecursingEventListeners it contains.
addListenerToAllComponents(EventListener) - Method in class norsys.netica.gui.NetPanel
 
addNodes(Net, String, String, String, String) - Method in class norsys.netica.DatabaseManager
addNodes()getAllNodesetsnode-set:  retrieving allnode-set:  ordering by prioritypriority order of node-setsorder of node-sets- in node-set namesdash in node-set namescase file:  readingfavor_discrete, for nodes from DBfavor_continuous, for nodes from DB
addStates(int, String, int, double) - Method in class norsys.netica.Node
addStates()node:  modifying statesstates:  adding Adds one or more states to this node, inserting them into the existing states.
addToNodeset(String) - Method in class norsys.netica.Node
addToNodeset()sets of nodesnode-set:  adding nodeAdds this node to the node-set named nodeset.

B

BELIEF_UPDATE - Static variable in class norsys.netica.Net
BELIEF_UPDATEBELIEF_UPDATEA form of autoUpdate.

C

calcState() - Method in class norsys.netica.Node
calcState()UNDEF_STATEnode:  inferencedeterministic updatingequation:  evaluatingReturns the discrete finding entered for this node if one has been entered, or the state calculated from its neighbors if that can be done deterministically (e.g., by equation or function table), or else UNDEF_STATE.
calcValue() - Method in class norsys.netica.Node
calcValue() UNDEF_DBLnode:  inferencedeterministic updatingequation:  evaluatingReturns the real-valued finding entered for this node if one has been entered, or the real value calculated from its neighbors if that can be done deterministically (e.g., by equation or function table), or else UNDEF_DBL.
Caseset - class norsys.netica.Caseset.
A collection of cases.
Caseset() - Constructor for class norsys.netica.Caseset
Caseset()Creates and returns a new Caseset, initially containing no cases, in the default environment, and with a name of null.
Caseset(String, Environ) - Constructor for class norsys.netica.Caseset
Caseset()case-set:  creatingsets of casesCaseset:  creatingCreates and returns a new Caseset, initially containing no cases.
clear() - Method in class norsys.netica.Value
clear()Removes all the information kept regarding this value.
close() - Method in class norsys.netica.Streamer
Deprecated. use finalize instead.
compile() - Method in class norsys.netica.Net
compile()junction tree:  creatingbelief updating:  preparing fornet:  compilingcompile netlink:  automatically addedCompiles this net for fast belief updating (i.e., junction tree propagation).
COMPLETE_CHECK - Static variable in class norsys.netica.Environ
COMPLETE_CHECKCOMPLETE_CHECKThe most thorough argument checking level; use only for debugging.
CONSTANT_NODE - Static variable in class norsys.netica.Node
CONSTANT_NODECONSTANT_NODEThe value of this node is considered unchanging until the net is rebuilt.
CONTINUOUS_TYPE - Static variable in class norsys.netica.Node
CONTINUOUS_TYPECONTINUOUS_TYPENode is for a continuous (analog) variable.
continuousInfoJLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBars
For continuous Nature nodes only, this is the label at the bottom of the display giving the real value of the node (see calcValue ).
continuousInfoJLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBar
For continuous Nature nodes only, this is the label at the bottom of the display giving the real value of the node (see calcValue ).
controlCaching(String, String, NodeList) - Method in class norsys.netica.Net
controlCaching()Contact Norsys for information on this function.
controlConcurrency(String, String) - Method in class norsys.netica.Environ
controlConcurrency()Environ:  controlling concurrency inThis function is used to control how Netica operates in multi-threaded environments.
copyNodes(NodeList) - Method in class norsys.netica.Net
copyNodes()net:  transfering nodesdisconnected link:  creatingcopy nodes or netnode:  duplicatingDuplicates the nodes in nodeList, and puts the duplicates in this net.
COUNTING_LEARNING - Static variable in class norsys.netica.Learner
COUNTING_LEARNINGCOUNTING_LEARNINGIndicates the case counting learning algorithm.
CREATE_EVENT - Static variable in class norsys.netica.NeticaEvent
CREATE_EVENTCREATE_EVENTNot currently implemented.
createCustomReport(NodeList, String, String) - Method in class norsys.netica.Net
createCustomReport()Creates a text (possibly HTML, RTF, TXT, etc.) report on this net, which is completely customizable using a text template, and can include a wide variety of information on the net, its nodes, links, probability tables, current findings, beliefs, decisions, sensitivity, junction tree, etc.
createNodePanel(Node, int) - Static method in class norsys.netica.gui.NodePanel
Returns a NodePanel associated with node, of the given style.

D

DatabaseManager - class norsys.netica.DatabaseManager.
A resource for connecting to a database and importing case data or exporting findings to that database.
DatabaseManager(String, String, Environ) - Constructor for class norsys.netica.DatabaseManager
DatabaseManager()Microsoft AccessMicrosoft ExcelAccess, MicrosoftExcel, MicrosoftOracle databaseMySQL databaseSQL Server, MS databasetext file as databaseWindows ODBC Data Source Administratorconnection pooling for DBpooling, connection, for DBdatabase:  connecting toODBC connection stringSQL connection stringconnection string for DBdatabase connectivityDatabaseManager:  creatingDatabaseManager:  in useDatabaseManager:  in useexecuteSql:  in useCreates and returns a new DatabaseManager object, which manages all interaction with a database.
DataDisplayer - interface norsys.netica.gui.DataDisplayer.
An interface that any object that displays Netica data should implement.
DECISION_NODE - Static variable in class norsys.netica.Node
DECISION_NODEDECISION_NODEThis node is for a variable that can be controlled by the agent (the "decision" node of an influence diagram).
DEFAULT_SAMPLING - Static variable in class norsys.netica.Net
DEFAULT_SAMPLINGDEFAULT_SAMPLINGA sampling method used by generateRandomCase.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
The background color of this panel upon construction.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
The background color of this panel upon construction.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NetPanel
The background color of this NetPanel upon construction.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
The background color of this panel upon construction.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NodePanel_Text
The background color of this panel upon construction.
defaultBackgroundColor - Static variable in class norsys.netica.gui.NodePanel_Circle
The background color of this panel upon construction.
defaultBackgroundColor_ConstantNode - Static variable in class norsys.netica.gui.NodePanel
Background Color for newly constructed Constant nodes.
defaultBackgroundColor_DecisionNode - Static variable in class norsys.netica.gui.NodePanel
Background Color for newly constructed Decision nodes.
defaultBackgroundColor_NatureNode - Static variable in class norsys.netica.gui.NodePanel
Background Color for newly constructed Nature nodes.
defaultBackgroundColor_UtilityNode - Static variable in class norsys.netica.gui.NodePanel
Background Color for newly constructed Utility nodes.
defaultBbBarAreaColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
The color of the belief bar region.
defaultBbBarAreaWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
Width in pixels of the belief bar region.
defaultBbBarColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
The color of the belief bars.
defaultBbBarHeight - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
Height in pixels of the belief bars.
defaultBbBarHeight - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
Height in pixels of the belief bars.
defaultBbBarsAreaColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
The color of the belief bar region.
defaultBbBarsAreaWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
Width in pixels of the belief bars region.
defaultBbBarsColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
The color of the belief bars.
defaultBbItemHeight - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
Height in pixels of each belief bar row.
defaultBbItemHeight - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
Height in pixels of each belief bar row.
defaultBorder - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
The javax.swing.border.Border surrounding the text.
defaultBorder - Static variable in class norsys.netica.gui.NodePanel_Text
The javax.swing.border.Border surrounding the text.
defaultBorderColor - Static variable in class norsys.netica.gui.NodePanel
The color of any border displayed by this panel upon construction.
defaultBorderColor - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
The color of any border displayed by this panel.
defaultBorderColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
The color of the border displayed by this panel upon construction.
defaultBorderColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
The color of the border displayed by this panel upon construction.
defaultBorderColor - Static variable in class norsys.netica.gui.NodePanel_Circle
The color of the border displayed by this panel upon construction.
defaultFont - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
The Font used for displaying the text in this panel.
defaultFont - Static variable in class norsys.netica.gui.NodePanel_BeliefBarsRow
The Font used for displaying the text in this panel.
defaultFont - Static variable in class norsys.netica.gui.NodePanel_BeliefBarRow
The Font used for displaying the text in this panel.
defaultFont - Static variable in class norsys.netica.gui.NodePanel_Text
The Font used for displaying the text in this panel.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel
The color of any foreground items, such as text.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
The color used for displaying the text in this panel.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
The color used for displaying the node title upon construction.
defaultForegroundColor - Static variable in class norsys.netica.gui.LinkGraphic
The color of this LinkGraphic upon construction.
defaultForegroundColor - Static variable in class norsys.netica.gui.NetPanel
The foreground color of this NetPanel upon construction.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBarsRow
The color used for displaying the text in this panel.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
The color used for displaying the node title upon construction.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_BeliefBarRow
The color used for displaying the text in this panel.
defaultForegroundColor - Static variable in class norsys.netica.gui.NodePanel_Text
The color used for displaying the text in this panel.
defaultHeight - Static variable in class norsys.netica.gui.NodePanel_Circle
Height in pixels of each circle/oval or hexagon.
defaultLineWidth - Static variable in class norsys.netica.gui.LinkGraphic
The width of this LinkGraphic upon construction.
defaultLinkColor - Static variable in class norsys.netica.gui.NetPanel
The color of any links drawn in this NetPanel.
defaultLinkPolicy - Static variable in class norsys.netica.gui.NetPanel
defaultLinkPolicy One of LINK_POLICY_NONE, LINK_POLICY_BELOW, or LINK_POLICY_ABOVE.
defaultLinkWidth - Static variable in class norsys.netica.gui.NetPanel
The width of the arrow shafts used in displaying links.
defaultRoundedCornerArcHeight - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
The arc-height of the rounded rectangle box upon construction.
defaultRoundedCornerArcWidth - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
The arc-width of the rounded rectangle box upon construction.
defaultStroke - Static variable in class norsys.netica.gui.LinkGraphic
The java.awt.Stroke used when initially constructing LinkGraphic objects.
defaultTextBorder - Static variable in class norsys.netica.gui.NodePanel_BeliefBarsRow
The Border around any text.
defaultTextBorder - Static variable in class norsys.netica.gui.NodePanel_BeliefBarRow
The Border around any text.
defaultTitleBorder - Static variable in class norsys.netica.gui.NodePanel
The Border around any title text.
defaultTitleBorder - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
The javax.swing.border.Border object surrounding the node title upon construction.
defaultTitleBorder - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
The javax.swing.border.Border object surrounding the node title upon construction.
defaultTitleFont - Static variable in class norsys.netica.gui.NodePanel
The Font of the title, if any.
defaultTitleFont - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
The Font used for displaying the node title upon construction.
defaultTitleFont - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
The Font used for displaying the node title upon construction.
defaultWidth - Static variable in class norsys.netica.gui.NodePanel_Circle
Width in pixels of each circle/oval or hexagon.
delete() - Method in class norsys.netica.Node
delete()remove nodenode:  deletingRemoves this node from its net, and frees all resources (e.g., memory) it was using.
delete() - Method in class norsys.netica.Net
Deprecated. use finalize instead.
delete() - Method in class norsys.netica.State
delete()node:  modifying statesstates:  removingRemoves this state from its node, so that the node has one fewer state.
deleteLink(int) - Method in class norsys.netica.Node
deleteLink()link:  deletingDelete the link entering this node from the given parent node.
deleteTables() - Method in class norsys.netica.Node
deleteTables()node:  deleting tables tables:  deletingCPT table:  deletingfunction table:  deletingexperience table:  deletingDeletes this node's function table, its CPT table, and its experience table.
DISCONNECTED_NODE - Static variable in class norsys.netica.Node
DISCONNECTED_NODEDISCONNECTED_NODEThis node is just a placeholder for a disconnected link, to indicate the type of parent it requires.
DISCRETE_TYPE - Static variable in class norsys.netica.Node
DISCRETE_TYPEDISCRETE_TYPENode is for a discrete (digital) variable.
DISPLAY_MODE_GRAYED - Static variable in class norsys.netica.gui.NodePanel
Used to display this NodePanel as "grayed" or "inactive".
DISPLAY_MODE_GRAYED - Static variable in class norsys.netica.gui.LinkGraphic
Used to display this LinkGraphic as "grayed" or "inactive".
DISPLAY_MODE_HILITED - Static variable in class norsys.netica.gui.NodePanel
Used to display this NodePanel as having been specially selected.
DISPLAY_MODE_HILITED - Static variable in class norsys.netica.gui.LinkGraphic
Used to display this LinkGraphic as having been specially selected.
DISPLAY_MODE_NORMAL - Static variable in class norsys.netica.gui.NodePanel
Used to display this NodePanel in normal fashion.
DISPLAY_MODE_NORMAL - Static variable in class norsys.netica.gui.LinkGraphic
Used to display this LinkGraphic in normal fashion.
DUPLICATE_EVENT - Static variable in class norsys.netica.NeticaEvent
DUPLICATE_EVENTDUPLICATE_EVENTNot currently implemented.
duplicateNodes(NodeList) - Method in class norsys.netica.Net
Deprecated. use copyNodes instead.

E

EM_LEARNING - Static variable in class norsys.netica.Learner
EM_LEARNINGEM_LEARNINGIndicates the EM (Expectation Maximization) learning algorithm.
enterCalibration(float[]) - Method in class norsys.netica.Value
Currently, for internal use only.
enterFinding(int) - Method in class norsys.netica.Node
Deprecated. use finding().enterState (stateIndex) instead.
enterFinding(String) - Method in class norsys.netica.Node
Deprecated. use finding().enterState (stateName) instead.
enterFindingNot(int) - Method in class norsys.netica.Node
Deprecated. use finding().enterStateNot (stateIndex) instead.
enterGaussian(double, double) - Method in class norsys.netica.Value
enterGaussian()finding:  entering GaussianGaussian findingnormal distribution findingEnters a likelihood finding for this Value object equivalent to a Gaussian distribution (normal distribution) with a mean of mean and a standard deviation of stddev.
enterInterval(double, double) - Method in class norsys.netica.Value
enterInterval()interval findingfinding:  entering intervalEnters a likelihood finding for this Value object equivalent to an interval extending from low to high: [low, high].
enterLikelihood(float[]) - Method in class norsys.netica.Node
Deprecated. use finding().enterLikelihood (likelihood) instead.
enterLikelihood(float[]) - Method in class norsys.netica.Value
enterLikelihood()Declares that this discrete or discretized node's random variable abides by the given likelihood distribution.
enterReal(double) - Method in class norsys.netica.Value
enterReal()Declares that this continuous node has the exact value value.
enterState(int) - Method in class norsys.netica.Value
enterState()finding:  enteringpositive finding:  enteringDeclares that this discrete node is in the state whose index is stateIndex.
enterState(String) - Method in class norsys.netica.Value
enterState()Declares that this discrete node is in the state named stateName.
enterStateNot(int) - Method in class norsys.netica.Value
enterStateNot()finding:  enteringnegative finding:  enteringDeclares that this discrete or discretized node is not in the state with index stateIndex.
enterValue(double) - Method in class norsys.netica.Node
Deprecated. use finding().enterReal (value) instead.
ENTROPY_SENSV - Static variable in class norsys.netica.Sensitivity
ENTROPY_SENSVENTROPY_SENSVMeasure entropy or mutual information.
Environ - class norsys.netica.Environ.
The background environment for all Netica operations.
Environ(String) - Constructor for class norsys.netica.Environ
Environ()Environ:  initializingConstructs an initialized Netica environment.
equationToTable(int, boolean, boolean) - Method in class norsys.netica.Node
equationToTable()node:  equationcompile net:  preparing fortables:  building from equationequation:  building tablegenerating table from equationBuilds the CPT for this node based on the equation that has been associated with it (see setEquation).
ERROR_ERR - Static variable in class norsys.netica.NeticaError
ERROR_ERRERROR_ERREvent occurred at "error" level - operation not properly finished, but no internal inconsistencies (e.g., user error, didn't finish process).
eventOccurred(NeticaEvent) - Method in class norsys.netica.General
eventOccurred()Netica calls back this method when an event occurred to an object we expressed interest in (by calling addListener).
eventOccurred(NeticaEvent) - Method in interface norsys.netica.NeticaListener
eventOccurred()A call-back method that Netica will call to indicate an event occurred.
eventOccurred(NeticaEvent) - Method in class norsys.netica.gui.NodePanel
A call-back method that Netica will call to indicate an event occurred.
eventOccurred(NeticaEvent) - Method in class norsys.netica.gui.NetPanel
A call-back method that Netica will call to indicate an event occurred.
EVERY_STATE - Static variable in class norsys.netica.Node
Deprecated. use State.EVERY_STATE
EVERY_STATE - Static variable in class norsys.netica.State
EVERY_STATEEVERY_STATEA "wildcard" state that matches all states of a node.
executeSql(String, String) - Method in class norsys.netica.DatabaseManager
executeSql()DatabaseManager:  DB commandsdatabase:  executing SQLSQL commands:  arbitraryExecutes sqlCmd, an arbitrary SQL1 command.
expandTimeSeries(int, double, double, String) - Method in class norsys.netica.Net
expandTimeSeries()Expands this dynamic Bayes net (DBN) to create one with time slices in the same way Netica Application does.

F

fadeCPTable(double) - Method in class norsys.netica.Node
fadeCPTable()tables:  fadingCPT table:  fadingSmoothes the conditional probabilities (CPT) of this node to indicate greater uncertainty, which accounts for the idea that the world may have changed a little since they were last learned.
finalize() - Method in class norsys.netica.RandomGenerator
finalize()random number generator:  deletingRemoves this RandomGenerator object and frees all its resources (e.g., memory).
finalize() - Method in class norsys.netica.NetTester
finalize()NetTester:  deletingRemoves the NetTester object and frees all its resources (e.g., memory).
finalize() - Method in class norsys.netica.Node
finalize()Called by the garbage collector, when this node can no longer be referenced.
finalize() - Method in class norsys.netica.DatabaseManager
finalize()DatabaseManager:  deletingRemoves this DatabaseManager from the system, and releases all the resources it uses (memory, connections, etc.).
finalize() - Method in class norsys.netica.Net
finalize()net:  deletingRemoves this net from the system, and releases all resources it uses (e.g., frees memory), including all its substructures (e.g., nodes).
finalize() - Method in class norsys.netica.Caseset
finalize()Caseset:  deletingRemoves the Caseset and frees all its resources (e.g., memory).
finalize() - Method in class norsys.netica.Sensitivity
finalize()Sensitivity:  deletingFrees all resources this Sensitivity is using.
finalize() - Method in class norsys.netica.Streamer
finalize()Streamer:  deletingReleases the resources (e.g., memory) used by this Streamer.
finalize() - Method in class norsys.netica.Learner
finalize()Learner:  deletingRemoves the Learner object and frees all its resources (e.g., memory).
finalize() - Method in class norsys.netica.Environ
finalize()Environ:  deletingending NeticaCloses down Netica and frees all its resources (e.g., memory).
finding() - Method in class norsys.netica.Node
finding()Returns the Value object holding this node's finding (aka, "evidence") information.
FIRST_CASE - Static variable in class norsys.netica.Net
FIRST_CASEFIRST_CASEPass this to read the first case.
flush() - Method in class norsys.netica.Streamer
flush()For a Streamer constructed from a java.io.OutputStream (see Streamer(OutputStream,String,Environ)), this will transfer the current contents of the Streamer to the the java.io.OutputStream.
FORWARD_SAMPLING - Static variable in class norsys.netica.Net
FORWARD_SAMPLINGFORWARD_SAMPLINGA sampling method used by generateRandomCase.
FROM_DEVELOPER_CND - Static variable in class norsys.netica.NeticaError
FROM_DEVELOPER_CNDFROM_DEVELOPER_CNDYour program indicated the error.
FROM_WRAPPER_CND - Static variable in class norsys.netica.NeticaError
FROM_WRAPPER_CNDFROM_WRAPPER_CNDThe error did not occur within native Netica itself, but in the JAVA API wrapper layer.

G

GAUSSIAN_VALUE - Static variable in class norsys.netica.Value
GAUSSIAN_VALUEThis node's continuous random variable has a gaussian likelihood distribution.
General - class norsys.netica.General.
A class that provides generic useful documentation and utility information regarding a Netica object.
General() - Constructor for class norsys.netica.General
 
generateRandomCase(NodeList, int, double, RandomGenerator) - Method in class norsys.netica.Net
generateRandomCase()findings:  generating randomsynthetic datalogic samplingrandom case generationcase:  generating randomsamplingsimulation DEFAULT_SAMPLING FORWARD_SAMPLING JOIN_TREE_SAMPLINGGenerate a random case by simulation.
generateRandomNumbers(double[], int, String) - Method in class norsys.netica.RandomGenerator
generateRandomNumbers()Generates num pseudo-random numbers using this RandomGenerator and puts them in the array results, returning the first one.
getAllNets(Environ) - Static method in class norsys.netica.Net
getAllNets()Retrieves from the given env a collection of all the Nets defined in that Environ.
getAllNodesets(boolean) - Method in class norsys.netica.Net
getAllNodesets()Returns a string which is a list of all node-sets defined for this net, separated by commas, in priority order, with highest priority first.
getArgumentChecking() - Method in class norsys.netica.Environ
getArgumentChecking()argument checkingReturns the current argument checking level, which is the degree to which Netica checks method call arguments.
getArrowHeadLength() - Method in class norsys.netica.gui.LinkGraphic
Gets the length of the arrow head.
getArrowHeadWidth() - Method in class norsys.netica.gui.LinkGraphic
Gets the width of the arrow head.
getAutoUpdate() - Method in class norsys.netica.Net
getAutoUpdate()net:  auto-updatingauto-updating BELIEF_UPDATEReturns this net's current auto-updating value.
getBelief(String) - Method in class norsys.netica.Node
getBelief()Gets the belief that this node is in the given named state.
getBeliefs() - Method in class norsys.netica.Node
getBeliefs()probability (as float)node:  inferencebelief updatingpropagating beliefsbeliefs:  calculatingposterior probabilities:  calculating Returns a belief vector indicating the current probability for each state of this node.
getBytes(String) - Method in class norsys.netica.User
getBytes()user-defined fields:  retrievingReturns the user-defined byte array associated with this fieldName, or null, if the field was never set.
getCaseFileDelimChar() - Method in class norsys.netica.Environ
getCaseFileDelimChar()Gets the character to use as a delimeter when creating case files.
getCenterPoint() - Method in class norsys.netica.gui.LinkGraphic
Gets the center point of the link.
getChildNodePanel() - Method in class norsys.netica.gui.LinkGraphic
Return the NodePanel that is nearest to the arrow end of this link.
getChildren() - Method in class norsys.netica.Node
getChildren()link:  detectingnode:  childrenchild nodes:  retrievingReturns a list of the children of this node.
getComment() - Method in class norsys.netica.General
getComment()node:  commentcomment:  for node, net, or statenet:  commentcomment:  for netstate:  commentcomment:  for statedescriptive text for net, node, or stateGets the documentation text concerning this object.
getConfusion(Node, int, int) - Method in class norsys.netica.NetTester
getConfusion()predicted vs actualNetTester:  confusion matrixconfusion matrixReturns the number of times the Net predicted predictedState for node, but the case file actually held actualState as the value of that node, during the performance test of a net.
getConstructorClass() - Static method in class norsys.netica.Node
getConstructorClass()Retrieves the classname of the class that Netica-J uses when constructing a Node.
getConstructorClass() - Static method in class norsys.netica.Net
getConstructorClass()Retrieves the classname of the class that Netica-J uses when automatically constructing new Nets.
getCPTable(float[]) - Method in class norsys.netica.Node
getCPTable()Retrieves the entire CPTable of this node as a 1-D array.
getCPTable(int[], float[]) - Method in class norsys.netica.Node
getCPTable()probability (as float)node:  CPT tabletables:  retrievingtables:  conditional probabilityCPT table:  retrievingReturns the conditional probabilities of this node, given that its parents are in the states indicated by the parentStates vector, by looking them up in the node's CPT table.
getCPTable(String, float[]) - Method in class norsys.netica.Node
getCPTable()This does the same as getCPTable(int[], float[]) except that it takes the parent states as a string rather than as an integer array.
getDefaultEnviron() - Static method in class norsys.netica.Environ
getDefaultEnviron()Returns the last created Environ.
getDisplayMode() - Method in class norsys.netica.gui.NodePanel
Returns whether the node is grayed, normal, or hi-lited.
getDisplayMode() - Method in class norsys.netica.gui.LinkGraphic
Returns whether the link is grayed, normal, or hi-lited.
getElimOrder() - Method in class norsys.netica.Net
getElimOrder()net:  elimination orderelimination orderReturns a list of the nodes of this net in their "elimination order" (which is used for triangulation in the compilation of this net), or null if there is no order currently associated with this net.
getEndPoint() - Method in class norsys.netica.gui.LinkGraphic
Gets the endpoint (arrowhead end) of the link.
getEnviron() - Method in class norsys.netica.RandomGenerator
getEnviron()Returns this RandomGenerator's environment.
getEnviron() - Method in class norsys.netica.General
getEnviron()Returns the Environ this object belong's to.
getEnviron() - Method in class norsys.netica.DatabaseManager
getEnviron()Returns this DatabaseManager's Netica environment.
getEnviron() - Method in class norsys.netica.Caseset
getEnviron()Returns the Environ that this object belongs to.
getEnviron() - Method in class norsys.netica.Streamer
getEnviron()Returns this Streamer's environment.
getEnviron() - Method in class norsys.netica.Learner
getEnviron()Returns the Environ that this object belongs to.
getEquation() - Method in class norsys.netica.Node
getEquation()node:  equationequation:  retrievingReturns the equation associated with this node, or the empty string (rather than null), if this node does not have an equation.
getErrorRate(Node) - Method in class norsys.netica.NetTester
getErrorRate()NetTester:  error rateerror rateReturns the accumulated "error rate" of node under the tests previously performed with test.
getExpectedUtils() - Method in class norsys.netica.Node
getExpectedUtils()expected utilityutility:  retrieving expectedutility (as float)node:  inferenceReturns a vector providing the expected utility of each choice in a decision node, considering findings currently entered.
getExpectedValue(double[]) - Method in class norsys.netica.Node
getExpectedValue()standard deviation UNDEF_DBLnode:  inferenceexpected valueReturns the expected real value of this node, based on the current beliefs for this node, and if moments is non-null, moments will be filled with the moments as well.
getExperTable(int[], double[]) - Method in class norsys.netica.Node
getExperTable() UNDEF_DBLnode:  experience tabletables:  retrievingtables:  experienceexperience table:  retrievingnumber of casesestimated sample sizeessGiven parentStates, a vector of states for the parents of this node, this returns the "experience" of the node for the situation described by the parent states.
getFileName() - Method in class norsys.netica.Net
getFileName()net:  file associated withfile name of netReturns the name of the file (including full path) that this net was last written to or read from.
getFileName() - Method in class norsys.netica.Streamer
getFileName()file name of streamerReturns the name of the file (including full path) that this stream was last written to or read from, if any.
getFinding() - Method in class norsys.netica.Node
Deprecated. use finding().getState() instead.
getFindingsProbability() - Method in class norsys.netica.Net
getFindingsProbability()net:  probability of findingsjoint probability of findingsprobability of all findingscase:  probability offindings:  probability ofReturns the joint probability of the findings entered into net so far (including any negative or likelihood findings).
getIdNumber() - Method in class norsys.netica.NeticaError
getIdNumber()error reporting:  getting ID numberReturns the error number identifying this error.
getIndex() - Method in class norsys.netica.State
getIndex()Returns the index number of this state.
getInputIndex(String) - Method in class norsys.netica.Node
getInputIndex()node:  input namesReturns the link index number of the link whose name is linkName, or -1 if there isn't one with that name (case sensitive comparison).
getInputName(int) - Method in class norsys.netica.Node
getInputName()link:  namenode:  input namesinput names of nodeGets the name of this node's input (i.e., link) identified by the given index.
getJointProbability(NodeList, int[]) - Method in class norsys.netica.Net
getJointProbability()joint probabilityReturns the joint probability that each node in nodeList is in the corresponding state of nodeStates, given the findings currently entered in the Bayes net.
getKind() - Method in class norsys.netica.NeticaEvent
getKind()Returns what kind of event occurred.
getKind() - Method in class norsys.netica.Node
getKind()node kindnode:  kindkind of nodedisconnected link:  determining whether NATURE_NODE CONSTANT_NODE DECISION_NODE UTILITY_NODE DISCONNECTED_NODEReturns whether this node is a nature, decision, utility or constant node.
getKind() - Method in class norsys.netica.Value
getKind()node findings:  determining kindREAL_VALUESTATE_VALUESTATE_NOT_VALUELIKELIHOOD_VALUEReturns the type of information we have on this node's value.
getLabel() - Method in class norsys.netica.General
 
getLabel(String) - Method in class norsys.netica.General
 
getLevels() - Method in class norsys.netica.Node
getLevels()level of discretized node (as double)node:  levelsstates:  levelsReturns the list of numbers used to enable a continuous node to act discrete, or enables a discrete node to provide real-valued numbers.
getLikelihood() - Method in class norsys.netica.Node
Deprecated. use finding().getLikelihood(null) instead.
getLikelihood(float[]) - Method in class norsys.netica.Value
getLikelihood()Returns as a likelihood vector the accumulated (likelihood and other) values entered for this discrete or discretized node.
getLinkGraphics() - Method in class norsys.netica.gui.NetPanel
Returns a collection of LinkGraphic objects, one for each link in the Net.
getLogLoss(Node) - Method in class norsys.netica.NetTester
getLogLoss()MOAC - mean over all casesNetTester:  logarithmic losslogarithmic lossReturns the "logarithmic loss" of node under the tests previously performed with test.
getMaxIterations() - Method in class norsys.netica.Learner
getMaxIterations()Returns the maximum number of learning-step iterations for learnCPTs.
getMaxMemoryUsage() - Method in class norsys.netica.Environ
Deprecated. use getMemoryUsageLimit() instead.
getMaxTolerance() - Method in class norsys.netica.Learner
getMaxTolerance()Returns the tolerance for the minimum change in data log likelihood between consecutive passes through the data, as a termination condition for any learning to be done by learner.
getMemoryUsageLimit() - Method in class norsys.netica.Environ
getMemoryUsageLimit()Returns the current limit on memory that Netica is permitted to allocate for tables.
getMessage() - Method in class norsys.netica.NeticaError
getMessage()error reporting:  getting descriptionReturns a message explaining the error.
getMessage() - Method in class norsys.netica.NeticaException
getMessage()Returns a formatted String detailing the nature of this exception and listing the NeticaErrors which are responsible for it.
getMethod() - Method in class norsys.netica.Learner
getMethod()Returns the algorithmic method used by this learner, one of COUNTING_LEARNING, EM_LEARNING, or GRADIENT_DESCENT_LEARNING.
getMissingDataChar() - Method in class norsys.netica.Environ
getMissingDataChar()Gets the character used to indicate missing data when creating case files.
getMostProbableConfig(NodeList) - Method in class norsys.netica.Net
getMostProbableConfig()most probable explanationMPEFinds the most probable configuration, also known as the most probable explanation (MPE), for all the nodes in the net.
getMutualInfo(Node) - Method in class norsys.netica.Sensitivity
getMutualInfo()self informationSensitivity:  for mutual infoSensitivity:  for entropymutual informationentropymutual informationentropy reductionMeasures the mutual information between two nodes, which is how much a finding at one node (called the "varying node") is expected to alter the beliefs (measured as decrease in its entropy) at another node (called the "query node").
getName() - Method in class norsys.netica.General
getName()net:  namenode:  namestate:  namename:  of netname:  of nodename:  of node statesReturns the identifer name of this object.
getNet() - Method in class norsys.netica.Node
getNet()node:  net containingReturns the net that this node is part of.
getNet() - Method in class norsys.netica.NodeList
getNet()Returns the Net that this NodeList's nodes come from.
getNet() - Method in class norsys.netica.gui.NetPanel
Return the Net that this NetPanel represents.
getNetClass() - Method in class norsys.netica.Environ
 
getNeticaErrors() - Method in class norsys.netica.NeticaException
getNeticaErrors()Returns a collection of the NeticaError objects describing the faults that are responsible for this exception.
getNode() - Method in class norsys.netica.State
getNode()Returns the Node that this state belongs to.
getNode() - Method in class norsys.netica.Value
getNode()Returns the Node that this Value object applies to.
getNode() - Method in class norsys.netica.VisualNode
getNode()Returns the Node that this VisualNode represents.
getNode() - Method in class norsys.netica.gui.NodePanel
Returns the Node corresponding to this NodePanel.
getNode(int) - Method in class norsys.netica.NodeList
getNode()A convenience version of java.util.Vector.get(int), that returns a Node, rather than an Object, to save you from having to do the cast yourself.
getNode(String) - Method in class norsys.netica.Net
getNode()net:  finding node by nameNodeList:  finding node by namenode:  finding by nameReturns the node of this net which has a name exactly matching name (case sensitive comparison).
getNodeAtTime(String, double[]) - Method in class norsys.netica.Net
 
getNodeClass() - Method in class norsys.netica.Environ
 
getNodePanels() - Method in class norsys.netica.gui.NetPanel
Returns the list of NodePanels contained by this NetPanel.
getNodes() - Method in class norsys.netica.Net
getNodes()topological ordernet:  getting nodesnodes in net:  retrievingReturns a list of all the nodes in this net.
getNodesetColor(String) - Method in class norsys.netica.Net
getNodesetColor()Retrieves the color of nodeset in this net.
getNodesWithDisplayMode(int) - Method in class norsys.netica.gui.NetPanel
Returns the list of Nodes in this NetPanel that are in the display mode.
getNthFieldName(int) - Method in class norsys.netica.User
getNthFieldName()node:  user-defined fieldsnet:  user-defined fieldsuser field:  enumerating allReturns the fieldName of the indexth user-defined named field; used for iterating through the fieldNames.
getNumber(String) - Method in class norsys.netica.User
getNumber()user-defined fields:  retrievingReturns the user-defined Number associated with this fieldName, or UNDEF_DBL, if the field was never set.
getNumeric() - Method in class norsys.netica.State
getNumeric()Returns the real value that has been previously associated with this discrete state (by calling setNumeric or Node.setLevels).
getNumStates() - Method in class norsys.netica.Node
getNumStates()node:  statesstates:  number ofReturns the number of states that this node can take on, or zero if this node is a continuous node that hasn't been discretized.
getObject() - Method in class norsys.netica.NeticaEvent
getObject()Returns the object that is associated with this event.
getObject(String) - Method in class norsys.netica.User
getObject()user-defined fields:  retrievingReturns the user-defined Object associated with this fieldName, or null, if the field was never set.
getParentNodePanel() - Method in class norsys.netica.gui.LinkGraphic
Return the NodePanel that is nearest to the start end of this link.
getParents() - Method in class norsys.netica.Node
getParents()link:  detectingnode:  parentsparent nodes:  retrievingReturns a list of the parents of this node.
getPosition() - Method in class norsys.netica.VisualNode
getPosition()coordinates of nodelocation of nodecenter of nodenode:  visual positionvisual appearance:  position of nodeposition of nodeRetrieves as elements 0 and 1 respectively, the x,y coordinates of the center of this node, as it would appear in a visual display (e.g., in Netica Application).
getQuadraticLoss(Node) - Method in class norsys.netica.NetTester
getQuadraticLoss()MOAC - mean over all casesNetTester:  quadratic lossquadratic lossBrier scoreReturns the "quadratic loss" of node under the tests previously performed.
getReal() - Method in class norsys.netica.Value
getReal()finding:  retrievingpositive finding, real-valued:  retrievingreal-valued finding:  retrievingReturns the real-valued finding entered for this node, or UNDEF_DBL if none has been entered since the last retraction (call to clear).
getRealFuncTable(int[], double[]) - Method in class norsys.netica.Node
getRealFuncTable() UNDEF_DBLnode:  function tabletables:  retrievingtables:  functionfunction table:  retrievingGets the real value of this node as a function of its parent nodes.
getReference() - Method in class norsys.netica.User
getReference()net:  user-defined datanode:  user-defined datauser-defined dataReturns a reference to information previously attached to this object using setReference, or null if none has been attached.
getRelatedNodes(NodeList, String) - Method in class norsys.netica.Node
getRelatedNodes()graph algorithmslink:  connectivityd-separation algorithmancestor nodes:  findingdescendent nodes:  findingconnected nodes:  findingMarkov blanket nodes:  findingd-connected nodes:  findingparent nodes:  retrievingchild nodes:  retrievingappend - lists of nodesunion - sets of nodesintersection - sets of nodessubtract - sets of nodesinclude_evidence_nodes, passed to getRelatedNodesexclude_self, passed to getRelatedNodesFinds all the Nodes that bear the relationship relation with this node and puts them in relatedNodes.
getRelatedNodes(NodeList, String, NodeList) - Method in class norsys.netica.Net
getRelatedNodes()graph algorithmsFinds all the Nodes that bear the relationship relation with any member of nodeList and puts them in relatedNodes.
getSeverity() - Method in class norsys.netica.NeticaError
getSeverity()error severityerror reporting:  getting severity of NOTHING_ERR REPORT_ERR NOTICE_ERR WARNING_ERR ERROR_ERR XXX_ERRseverity level of errorReturns the severity level of this error (one of NOTHING_ERR, REPORT_ERR, NOTICE_ERR, WARNING_ERR, ERROR_ERR, or XXX_ERR).
getStartPoint() - Method in class norsys.netica.gui.LinkGraphic
Gets the startpoint (non-arrowhead end) of the link.
getState() - Method in class norsys.netica.Value
getState()finding:  retrievingpositive finding:  retrievingGets the state finding entered for this (discrete or discretized) node.
getState() - Method in class norsys.netica.gui.NodePanel_BeliefBarsRow
NodePanel_BeliefBarsRow.getState().header
getState() - Method in class norsys.netica.gui.NodePanel_BeliefBarRow
NodePanel_BeliefBarRow.getState().header
getState(String) - Method in class norsys.netica.RandomGenerator
getState()Returns a string that can be used as a seed to RandomGenerator to create a random generator that will produce exactly the same pseudo-random results as this one will.
getStateFuncTable(int[], int[]) - Method in class norsys.netica.Node
getStateFuncTable() UNDEF_STATEnode:  function tabletables:  retrievingtables:  functionfunction table:  retrievingGets the state value of this node as a function of its parent nodes.
getString(String) - Method in class norsys.netica.User
getString()user-defined fields:  retrievingReturns the user-defined String associated with this fieldName, or null, if the field was never set.
getStroke() - Method in class norsys.netica.gui.LinkGraphic
Returns the java.awt.Stroke used for drawing the line portion (body) of the link.
getStyle() - Method in class norsys.netica.VisualNode
getStyle()node:  visual stylevisual appearance:  style of nodestyle of nodeReturns the current "style descriptor" of this node for any visual display (e.g., in Netica Application, or within a NetPanel).
getStyle() - Method in class norsys.netica.gui.NodePanel
Returns the display style of this NodePanel.
getTitle() - Method in class norsys.netica.General
getTitle()net:  titlenode:  titlestate:  titletitle of net, node, or stateGets the unrestricted label of this object.
getType() - Method in class norsys.netica.Node
getType()node typenode:  typetype of nodediscretecontinuous DISCRETE_TYPE CONTINUOUS_TYPEReturns DISCRETE_TYPE if the variable corresponding to this node is discrete (digital), and CONTINUOUS_TYPE if it is continuous (analog).
getValueEntered() - Method in class norsys.netica.Node
Deprecated. use finding().getReal() instead.
getVarianceOfReal(Node) - Method in class norsys.netica.Sensitivity
getVarianceOfReal()expected value:  sensitivityexpected decrease in variancevariance of a nodeSensitivity:  for variancevariance reductionMeasures how much a finding at one node (called the "varying node") is expected to reduce the variance of another node (called the "query node").
getVersion() - Method in class norsys.netica.Environ
getVersion()Environ:  getting version infoversion of NeticaReturns the version number of Netica, multiplied by 100.
getVersionString() - Method in class norsys.netica.Environ
getVersionString()Returns a String consisting of the full version number, a space, a code for the type of machine or OS it is running on, a comma, the name of the program, and finally a code indicating some build information (in parentheses).
getWarnings(int, Environ) - Static method in class norsys.netica.NeticaError
getWarnings()Returns a vector of all the NeticaErrors in env that are at the severity level severity or higher.
GRADIENT_DESCENT_LEARNING - Static variable in class norsys.netica.Learner
GRADIENT_DESCENT_LEARNINGGRADIENT_DESCENT_LEARNINGIndicates the Gradient Descent learning algorithm.
grayedModeBGColor - Static variable in class norsys.netica.gui.NodePanel
A color to use for signaling that this NodePanel is in "grayed out" mode ( see setDisplayMode(DISPLAY_MODE_GRAYED)).
grayedModeColor - Static variable in class norsys.netica.gui.LinkGraphic
A color to use for signaling that this LinkGraphic is in "grayed out" mode ( see setDisplayMode(DISPLAY_MODE_GRAYED)).

H

hasTable(boolean[]) - Method in class norsys.netica.Node
hasTable()CPT table:  test if presentnode:  tablestables:  test if presentReturns true if this node has a function table or a CPT table, otherwise false.
hilitedModeBGColor - Static variable in class norsys.netica.gui.NodePanel
A color to use for signaling that this NodePanel is in "hilited" mode ( see setDisplayMode(DISPLAY_MODE_HILITED)).
hilitedModeColor - Static variable in class norsys.netica.gui.LinkGraphic
A color to use for signaling that this LinkGraphic is in "hilited" mode ( see setDisplayMode(DISPLAY_MODE_HILITED)).

I

IMPOSS_STATE - Static variable in class norsys.netica.Node
Deprecated. use State.IMPOSS_STATE
IMPOSS_STATE - Static variable in class norsys.netica.State
IMPOSS_STATEIMPOSS_STATEIndicates that the state value is irrelevant, because it is for a condition that will never occur.
INCONS_FINDING_CND - Static variable in class norsys.netica.NeticaError
INCONS_FINDING_CNDINCONS_FINDING_CNDAn inconsistent finding was entered into a Node.
INFINITY - Static variable in class norsys.netica.Environ
INFINITY INFINITYThe number used to represent an infinite numeric value; the negative of this number represents negative infinity.
insertFindings(NodeList, String, String, String) - Method in class norsys.netica.DatabaseManager
insertFindings()findings:  putting in databasecase:  putting in databaseDatabaseManager:  filling DBdatabase:  populating from findingsINSERT SQL commandSQL commands:  INSERTDatabaseManager:  in useDatabaseManager:  in useinsertFindings:  in useenterFindingNot:  in useCreates a new record in the database dbMgr consisting of the current findings.
INTERVAL_VALUE - Static variable in class norsys.netica.Value
INTERVAL_VALUEINTERVAL_VALUEThis node's continuous random variable is within a range of possible values.
isAscii(String) - Static method in class norsys.netica.Util
isAsciiReturns true, iff, the given string contains only ascii characters, that is, characters in the range 1..255, inclusive.
isBeliefUpdated() - Method in class norsys.netica.Node
isBeliefUpdated()updating:  test if donebelief updating:  test if donepropogation:  test if doneWhether the beliefs for this node have already been calculated (by belief propagation).
isDeterministic() - Method in class norsys.netica.Node
isDeterministic()CPT table:  test if deterministicnode:  tablestables:  test if deterministicfunction table:  testdeterministic testWhether the value of this node, given its parents, is deterministic (versus probabilistic).
isInCategory(int) - Method in class norsys.netica.NeticaError
isInCategory()error condition (NeticaError)error reporting:  getting category ofcategory of error OUT_OF_MEMORY_CND INCONS_FINDING_CND USER_ABORTED_CND FROM_DEVELOPER_CND FROM_WRAPPER_CNDReturns a boolean to indicate whether this error was caused by the condition errcnd.
isInNodeset(String) - Method in class norsys.netica.Node
isInNodeset()node-set:  membership testingmembership in node-setReturns whether this node is a member of nodeset.
isNear(Point) - Method in class norsys.netica.gui.LinkGraphic
Returns true if point is within LINK_CLICK_DISTANCE_TOLERANCE pixels of the nearest point on this LinkGraphic.
isRelated(String, Node) - Method in class norsys.netica.Node
isRelated()graph algorithmsancestor nodes:  testing fordescendent nodes:  testing forconnected nodes:  testing forMarkov blanket nodes:  testing ford-connected nodes:  testing forparent nodes:  testing forchild nodes:  testing for Tests whether this node bears the relationship relation with otherNode.

J

JOIN_TREE_SAMPLING - Static variable in class norsys.netica.Net
JOIN_TREE_SAMPLINGJOIN_TREE_SAMPLINGA sampling method used by generateRandomCase.

L

learnCPTs(NodeList, Caseset, double) - Method in class norsys.netica.Learner
learnCPTs()degree of casescase-set:  learning fromback-propagation algorithmcase file:  learning CPTs fromLearner:  activatingCaseset:  learning CPTs fromtables:  learningCPT table:  learninglearning algorithmscounting learningEM learninggradient descent learningPerforms learning of CPT tables from data.
Learner - class norsys.netica.Learner.
An object for managing batch-mode learning, such as EM or Gradient Descent learning, of CPTs from case data.
Learner(int) - Constructor for class norsys.netica.Learner
Learner()Creates and returns a new Learner object for use in learning of CPTs from case data, and associates it with the default Netica environment.
Learner(int, String, Environ) - Constructor for class norsys.netica.Learner
Learner()learning methodLearner:  creatinglearning from data EM_LEARNING GRADIENT_DESCENT_LEARNING COUNTING_LEARNINGCreates and returns a new Learner object for use in learning of CPTs from case data, and associates it with a given Netica environment.
LIKELIHOOD_FINDING - Static variable in class norsys.netica.Node
Deprecated. use Value.LIKELIHOOD_VALUE instead.
LIKELIHOOD_VALUE - Static variable in class norsys.netica.Value
LIKELIHOOD_VALUELIKELIHOOD_VALUEThis (discrete or discretized) node's random variable abides by a likelihood distribution.
LINK_CLICK_DISTANCE_TOLERANCE - Static variable in class norsys.netica.gui.LinkGraphic
LINK_CLICK_DISTANCE_TOLERANCEControls the threshold used by isNear.
LINK_DEFAULT_ARROW_HEAD_LENGTH - Static variable in class norsys.netica.gui.LinkGraphic
Used to set the length of the triangle forming a link arrow's head.
LINK_DEFAULT_ARROW_HEAD_WIDTH - Static variable in class norsys.netica.gui.LinkGraphic
Used to set the width of the triangle forming a link arrow's head.
LINK_POLICY_ABOVE - Static variable in class norsys.netica.gui.NetPanel
LINK_POLICY_ABOVEDisplay the net's links, such that, should they overlap any NodePanels, the links appear above the nodes.
LINK_POLICY_BELOW - Static variable in class norsys.netica.gui.NetPanel
LINK_POLICY_BELOWDisplay the net's links, such that, should they overlap any NodePanels, the nodes appear above the links.
LINK_POLICY_NONE - Static variable in class norsys.netica.gui.NetPanel
LINK_POLICY_NONEDo not display the net's links.
LinkGraphic - class norsys.netica.gui.LinkGraphic.
A java.awt.Component for displaying a link (arrow) between two NodePanels.
LinkGraphic(Container, NodePanel, NodePanel) - Constructor for class norsys.netica.gui.LinkGraphic
public constructors

M

mapStateList(int[], NodeList, NodeList) - Static method in class norsys.netica.NodeList
mapStateList()NodeList:  mapping state valuesReturns an array of states, the same states that are in the srcStates array, except in a different order.
MAX_STATES_DISPLAYED - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
A limit on the number of states that are displayed.
MAX_STATES_DISPLAYED - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
A limit on the number of states that are displayed.
maxWidth - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
The maximum width in pixels of these panels.
maxWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
The maximum width in pixels of these panels.
maxWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
The maximum width in pixels of these panels.
minWidth - Static variable in class norsys.netica.gui.NodePanel_LabeledBox
The minimum width in pixels of these panels.
minWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBars
The minimum width in pixels of these panels.
minWidth - Static variable in class norsys.netica.gui.NodePanel_BeliefBar
The minimum width in pixels of these panels.
mouseClicked(MouseEvent) - Method in class norsys.netica.gui.LinkGraphic
Informs all listeners of the click (press and release) event, provided this LinkGraphic is enabled and the mouse was pressed sufficiently near to the link.
mouseEntered(MouseEvent) - Method in class norsys.netica.gui.LinkGraphic
Satisfies MouseListener interface; does nothing (has empty implementation body).
mouseExited(MouseEvent) - Method in class norsys.netica.gui.LinkGraphic
Satisfies MouseListener interface; does nothing (has empty implementation body).
mousePressed(MouseEvent) - Method in class norsys.netica.gui.LinkGraphic
Informs all listeners of the press event, provided this LinkGraphic is enabled and the mouse was pressed sufficiently near to the link.
mouseReleased(MouseEvent) - Method in class norsys.netica.gui.LinkGraphic
Informs all listeners of the release event, provided this LinkGraphic is enabled and the mouse was pressed sufficiently near to the link.
moveBy(int, int) - Method in class norsys.netica.gui.NodePanel
Move this panel by a fixed displacement.

N

NAME_MAX - Static variable in class norsys.netica.General
NAME_MAX NAME_MAXThe maximum number of characters in the name of a General Netica object (e.g., Node, Net, State).
NATURE_NODE - Static variable in class norsys.netica.Node
NATURE_NODENATURE_NODEThe value of this node is determined by nature (also known as a "chance" or "deterministic" node).
NEGATIVE_FINDING - Static variable in class norsys.netica.Node
Deprecated. use Value.STATE_NOT_VALUE instead.
Net - class norsys.netica.Net.
A Bayesian belief network or decision network.
Net() - Constructor for class norsys.netica.Net
Net()Creates and returns a new net, initially having no nodes, and places it in the current default Environ (see getDefaultEnviron).
Net(Environ) - Constructor for class norsys.netica.Net
Net()net:  creating NAME_MAXname:  of netCreates and returns a new net, initially having no nodes.
Net(Net, String, Environ, String) - Constructor for class norsys.netica.Net
Net() NAME_MAXname:  of netcopy netduplicating a netnet:  duplicatingNet copy-constructor.
Net(Streamer) - Constructor for class norsys.netica.Net
Net()Streamer:  reading net fromnet:  reading from fileReads a net from inStream, and returns the new net read, or throws a Netica Exception, if reading was impossible.
NeticaError - class norsys.netica.NeticaError.
A class that holds information on errors that occurred while Netica was attempting some operation (which become part of the NeticaException thrown), or on warnings or other status reports of successful Netica operations.
NeticaEvent - class norsys.netica.NeticaEvent.
Information describing an event which occurred within Netica.
NeticaException - exception norsys.netica.NeticaException.
A java.lang.Exception that holds extra information when Netica reports an error for some attempted operation.
NeticaException(int, String) - Constructor for class norsys.netica.NeticaException
NeticaException()Constructs a numbered NeticaException with the given error message.
NeticaException(String) - Constructor for class norsys.netica.NeticaException
NeticaException()Constructs a generic NeticaException with the given error message.
NeticaListener - interface norsys.netica.NeticaListener.
An interface that all classes which are to receive NeticaEvents must implement.
NetPanel - class norsys.netica.gui.NetPanel.
A javax.swing.JPanel for displaying a net.
NetPanel(Net, int) - Constructor for class norsys.netica.gui.NetPanel
Creates a new NetPanel for displaying the given net.
NetTester - class norsys.netica.NetTester.
A tool for grading a Bayes net by using a set of real cases to see how well the predictions or diagnosis of the net match the actual cases.
NetTester(NodeList, NodeList, int) - Constructor for class norsys.netica.NetTester
NetTester()grading a Bayes netprediction:  testingdiagnosis:  testingNetTester:  creatingnet:  testing performanceperformance testingtesting performance of netNetTester:  in usetestWithCaseset:  in usePrintConfusionMatrix:  in usegetConfusion:  in usegetErrorRate:  in usegetLogLoss:  in usefinalize:  in useCreates a NetTester which is a tool for grading a Bayes net, using a set of real cases to see how well the predictions or diagnosis of the net match the actual cases.
NEXT_CASE - Static variable in class norsys.netica.Net
NEXT_CASENEXT_CASEPass this to read the case following the last case read.
NO_CHECK - Static variable in class norsys.netica.Environ
NO_CHECKNO_CHECKTurns off all argument checking.
NO_FINDING - Static variable in class norsys.netica.Node
Deprecated. use Value.NO_VALUE instead.
NO_MORE_CASES - Static variable in class norsys.netica.Net
NO_MORE_CASESNO_MORE_CASESReturned by Netica when trying to read past the last case.
NO_VALUE - Static variable in class norsys.netica.Value
NO_VALUENO_VALUEThere is no information on the range of values this node can adopt.
Node - class norsys.netica.Node.
A node (object which represents a variable) in a Net (Bayesian belief network or decision network).
NODE_STYLE_ABSENT - Static variable in class norsys.netica.gui.NodePanel
NODE_STYLE_ABSENTDisplay the node as empty space.
NODE_STYLE_AUTO_SELECT - Static variable in class norsys.netica.gui.NodePanel
NODE_STYLE_AUTO_SELECTDisplay the node using a style that seems appropriate.
NODE_STYLE_BELIEF_BARS - Static variable in class norsys.netica.gui.NodePanel
NODE_STYLE_BELIEF_BARSDisplay the node similar to the Belief Bars Style in Netica Application.
NODE_STYLE_CIRCLE - Static variable in class norsys.netica.gui.NodePanel
NODE_STYLE_CIRCLEDisplay the node as a circle or hexagon (Utility nodes).
NODE_STYLE_LABELED_BOX - Static variable in class norsys.netica.gui.NodePanel
NODE_STYLE_LABELED_BOXDisplay the node titles only, in rounded boxes.
NODE_STYLE_TEXT - Static variable in class norsys.netica.gui.NodePanel
NODE_STYLE_TEXTDisplay the node titles only.
Node() - Constructor for class norsys.netica.Node
Node()Default constructor - do not call this constructor directly.
Node(String, int, Net) - Constructor for class norsys.netica.Node
Node()net:  adding nodes NAME_MAXnode:  creatingdiscretecontinuousCreates and returns a new node for net.
Node(String, String, Net) - Constructor for class norsys.netica.Node
Node()Construct a node with the given name and state names, for the given Net.
NodeList - class norsys.netica.NodeList.
A java.util.Vector that is meant to store only Nodes from a single Net.
NodeList(Net) - Constructor for class norsys.netica.NodeList
NodeList()Constructs an empty NodeList of initial capacity 100.
NodeList(NodeList) - Constructor for class norsys.netica.NodeList
NodeList()Copy constructs a new NodeList from an existing NodeList.
NodePanel - class norsys.netica.gui.NodePanel.
An abstract base class used for constucting classes that are different styles of NodePanel.
NodePanel_BeliefBar - class norsys.netica.gui.NodePanel_BeliefBar.
A javax.swing.JPanel for displaying a Nature Node's Beliefs, or a Utility node's Expected Utilities.
NodePanel_BeliefBar(Node) - Constructor for class norsys.netica.gui.NodePanel_BeliefBar
NodePanel_BeliefBar.NodePanel_BeliefBar().header
NodePanel_BeliefBarRow - class norsys.netica.gui.NodePanel_BeliefBarRow.
A javax.swing.JPanel for displaying the state information in a NodePanel_BeliefBar.
NodePanel_BeliefBarRow(NodePanel_BeliefBar, State) - Constructor for class norsys.netica.gui.NodePanel_BeliefBarRow
NodePanel_BeliefBarRow.NodePanel_BeliefBarRow().header
NodePanel_BeliefBars - class norsys.netica.gui.NodePanel_BeliefBars.
A javax.swing.JPanel for displaying a Nature Node's Beliefs, or a Utility node's Expected Utilities.
NodePanel_BeliefBars(Node) - Constructor for class norsys.netica.gui.NodePanel_BeliefBars
NodePanel_BeliefBars.NodePanel_BeliefBars().header
NodePanel_BeliefBarsRow - class norsys.netica.gui.NodePanel_BeliefBarsRow.
A javax.swing.JPanel for displaying the state information in a NodePanel_BeliefBars.
NodePanel_BeliefBarsRow(NodePanel_BeliefBars, State) - Constructor for class norsys.netica.gui.NodePanel_BeliefBarsRow
NodePanel_BeliefBarsRow.NodePanel_BeliefBarsRow().header
NodePanel_Circle - class norsys.netica.gui.NodePanel_Circle.
A javax.swing.JPanel for displaying a Node as a simple geometric shape.
NodePanel_Circle(Node) - Constructor for class norsys.netica.gui.NodePanel_Circle
NodePanel_Circle.NodePanel_Circle().header
NodePanel_LabeledBox - class norsys.netica.gui.NodePanel_LabeledBox.
A javax.swing.JPanel for displaying a Node as its title in either a rounded rectangle (Nature nodes) or elongated hexagon (Utility nodes) (see Node.getKind).
NodePanel_LabeledBox(Node) - Constructor for class norsys.netica.gui.NodePanel_LabeledBox
 
NodePanel_Text - class norsys.netica.gui.NodePanel_Text.
A javax.swing.JPanel for displaying a Node by simply its title.
NodePanel_Text(Node) - Constructor for class norsys.netica.gui.NodePanel_Text
 
nodeTitleJLabel - Variable in class norsys.netica.gui.NodePanel
The title Component, if this NodePanel displays a title, otherwise null.
norsys.netica - package norsys.netica
 
norsys.netica.gui - package norsys.netica.gui
 
NOTHING_ERR - Static variable in class norsys.netica.NeticaError
NOTHING_ERRNOTHING_ERRNot anything.
NOTICE_ERR - Static variable in class norsys.netica.NeticaError
NOTICE_ERRNOTICE_ERRNotice of something unusual.

O

OUT_OF_MEMORY_CND - Static variable in class norsys.netica.NeticaError
OUT_OF_MEMORY_CNDOUT_OF_MEMORY_CNDSystem did not have enough memory to complete operation.

P

paint(Graphics) - Method in class norsys.netica.gui.LinkGraphic
 
paintComponent(Graphics) - Method in class norsys.netica.gui.NodePanel
Overrides javax.swing.JComponent.paintComponent().
paintComponent(Graphics) - Method in class norsys.netica.gui.NodePanel_LabeledBox
 
paintComponent(Graphics) - Method in class norsys.netica.gui.NodePanel_BeliefBars
 
paintComponent(Graphics) - Method in class norsys.netica.gui.NetPanel
Overrides javax.swing.JComponent.paintComponent() to draw link arrows on this JPanel.
paintComponent(Graphics) - Method in class norsys.netica.gui.NodePanel_BeliefBar
 
paintComponent(Graphics) - Method in class norsys.netica.gui.NodePanel_Circle
 
parentStatesToIndexes(String) - Method in class norsys.netica.Node
parentStatesToIndexes()Utility to convert a comma and/or space delimited string of parent state names for this node to an array of state indexes.
probabilitiesFormat - Static variable in class norsys.netica.gui.NodePanel
probabilitiesFormatUsed to control the format of any probabilities displayed by this NodePanel.
PROBABILITY_FORMAT_1 - Static variable in class norsys.netica.gui.NodePanel
Used to display probabilities with no decimal place and a trailing "%" symbol.
PROBABILITY_FORMAT_2 - Static variable in class norsys.netica.gui.NodePanel
Used to display probabilities as percentages, but without the "%" symbol, and with one decimal place.
PROBABILITY_FORMAT_3 - Static variable in class norsys.netica.gui.NodePanel
Used to display probabilities as floats between 0.0 and 1.0, with two decimal places.
PROBABILITY_FORMAT_4 - Static variable in class norsys.netica.gui.NodePanel
Used to display probabilities as floats between 0.00 and 1.00, with three decimal places.

Q

QUICK_CHECK - Static variable in class norsys.netica.Environ
QUICK_CHECKQUICK_CHECKOnly does argument checking that can be done very quickly.

R

RandomGenerator - class norsys.netica.RandomGenerator.
A class that manages the generation of random numbers.
RandomGenerator(String, Environ, String) - Constructor for class norsys.netica.RandomGenerator
RandomGenerator()Creates a new object to control the randomized aspects of Netica, or generate pseudo-random numbers.
readCase(long[], Streamer, NodeList, long[], double[]) - Method in class norsys.netica.Net
Deprecated. use readFindings instead.
readFindings(long[], Streamer, boolean, NodeList, long[], double[]) - Method in class norsys.netica.Net
readFindings()text file as databasefindings:  reading from fileCaseset position (as long)Streamer:  reading findings fromcase file:  reading FIRST_CASE NEXT_CASE NO_MORE_CASESReads a set of findings (i.e., a case) from a file containing one or more cases.
readFindings(long[], Streamer, NodeList, long[], double[]) - Method in class norsys.netica.Net
Deprecated.  
REAL_SENSV - Static variable in class norsys.netica.Sensitivity
REAL_SENSVREAL_SENSVMeasure the effect on the real numeric value (rather than just the state).
REAL_VALUE - Static variable in class norsys.netica.Value
REAL_VALUEREAL_VALUEThis node's continuous random variable is precisely a single real number.
RecursingEventListener - interface norsys.netica.gui.RecursingEventListener.
An interface that defines two methods, one which should add a mouseListener to this Component and all contained (recursively) Components for which mouse events may be listened for.
redoOperation(double) - Method in class norsys.netica.Net
redoOperation()Call this to redo an operation that was undone by undoLastOperation.
refreshDataDisplayed() - Method in class norsys.netica.gui.NodePanel
 
refreshDataDisplayed() - Method in class norsys.netica.gui.NodePanel_BeliefBars
 
refreshDataDisplayed() - Method in class norsys.netica.gui.LinkGraphic
 
refreshDataDisplayed() - Method in class norsys.netica.gui.NetPanel
 
refreshDataDisplayed() - Method in interface norsys.netica.gui.DataDisplayer
Refresh all the data in this graphical Component, so that it correctly represents the current state of the Netica object it represents.
refreshDataDisplayed() - Method in class norsys.netica.gui.NodePanel_BeliefBarsRow
 
refreshDataDisplayed() - Method in class norsys.netica.gui.NodePanel_BeliefBar
 
refreshDataDisplayed() - Method in class norsys.netica.gui.NodePanel_BeliefBarRow
 
REGULAR_CHECK - Static variable in class norsys.netica.Environ
REGULAR_CHECKREGULAR_CHECKDoes argument checking suitable for software development, and final releases of your software where speed is not significant.
REMOVE_EVENT - Static variable in class norsys.netica.NeticaEvent
REMOVE_EVENTREMOVE_EVENTIndicates an object is about to be removed from its owner, and shortly after that may be deleted.
remove(Component) - Method in class norsys.netica.gui.NetPanel
Be sure to call super.remove(component), if you override this.
removeField(String) - Method in class norsys.netica.User
removeField()Remove the user field named fieldName from this object.
removeFromNodeset(String) - Method in class norsys.netica.Node
removeFromNodeset()node-set:  removing nodeRemoves this node from the node-set named nodeset.
removeListener(NeticaListener) - Method in class norsys.netica.General
removeListener()Removes the given listener from this object's list of listeners.
removeListenerFromAllComponents(EventListener) - Method in class norsys.netica.gui.NodePanel
 
removeListenerFromAllComponents(EventListener) - Method in interface norsys.netica.gui.RecursingEventListener
Remove the given EventListener from this object and, if it is a Container, from all RecursingEventListeners it contains.
removeListenerFromAllComponents(EventListener) - Method in class norsys.netica.gui.NetPanel
 
reorderNodesets(String) - Method in class norsys.netica.Net
reorderNodesets()node-set:  ordering by prioritypriority order of node-setsorder of node-setscolor of nodevisual appearance:  color of nodeThis rearranges the priority order of the node-sets of this net.
reorderStates(int[]) - Method in class norsys.netica.Node
reorderStates()node:  modifying statesstates:  reorderingRearranges the order of the states so that state i is moved to position newOrder[i].
replaceNodePanel(NodePanel, NodePanel) - Method in class norsys.netica.gui.NetPanel
Replace one NodePanel in this NetPanel with another one representing the same Node.
REPORT_ERR - Static variable in class norsys.netica.NeticaError
REPORT_ERRREPORT_ERRNot an error, but a report of success.
reportJunctionTree() - Method in class norsys.netica.Net
Deprecated. use @link #createCustomReport() instead.
retractFindings() - Method in class norsys.netica.Node
Deprecated. use finding().clear() instead.
retractFindings() - Method in class norsys.netica.Net
retractFindings()net:  retracting all findingsfindings:  retractingfinding:  retractingRetracts all findings (i.e., the current case) from all the nodes in this net, except "constant" nodes (use Node.finding().clear() for that).
reverseLink(Node) - Method in class norsys.netica.Node
reverseLink()link:  automatically addedlink:  reversingReverses the link from parentNode to this child node, so that instead it goes from this node to parentNode.
reviseCPTsByCaseFile(Streamer, NodeList, double) - Method in class norsys.netica.Net
reviseCPTsByCaseFile()degree of casestext file as databasecase file:  learning CPTs fromnode:  CPT tabletables:  learningCPT table:  learninglearning from dataRevises the CPTs of these nodes, to account for the cases in the given file.
reviseCPTsByFindings(NodeList, double) - Method in class norsys.netica.Net
reviseCPTsByFindings()degree of casesfindings:  learning fromnode:  CPT tabletables:  learningCPT table:  learninglearning from dataRevises the CPTs of these nodes, to account for the currently entered case.
rowsPanel - Variable in class norsys.netica.gui.NodePanel_BeliefBars
The panel containing all the NodePanel_BeliefBarsRow objects, one for each state of this node.
rowsPanel - Variable in class norsys.netica.gui.NodePanel_BeliefBar
The panel containing all the NodePanel_BeliefBarRow objects, one for each state of this node.

S

Sensitivity - class norsys.netica.Sensitivity.
A sensitivity measurer, which determines to what degree a new finding at one node is expected to affect the beliefs of a certain other node.
Sensitivity(Node, NodeList, int) - Constructor for class norsys.netica.Sensitivity
Sensitivity()query nodevarying nodetarget nodeutility-free value of information ENTROPY_SENSV REAL_SENSV VARIANCE_SENSVSensitivity:  creatingsensitivity to findingsSensitivity:  in useSensitivity:  in use ENTROPY_SENSV:  in usefinalize:  in usesensitivity to findingsvalue of informationmutual informationentropy reductionvariance reductionCreates a sensitivity measuring object, which measures how much the beliefs at one node (called the "query node" or "target node") will change if a finding is entered at another node (called the "varying node").
setArgumentChecking(int) - Method in class norsys.netica.Environ
setArgumentChecking()argument checkingEnviron:  setting checking leveldebug modechecking arguments NO_CHECK QUICK_CHECK REGULAR_CHECK COMPLETE_CHECK QUERY_CHECKSets the level to which Netica checks all arguments you pass it (one of NO_CHECK, QUICK_CHECK, REGULAR_CHECK, COMPLETE_CHECK).
setArrowHeadLength(int) - Method in class norsys.netica.gui.LinkGraphic
Sets the length of the arrow head.
setArrowHeadWidth(int) - Method in class norsys.netica.gui.LinkGraphic
Sets the width of the arrow head.
setAutoUpdate(int) - Method in class norsys.netica.Net
setAutoUpdate()net:  auto-updatingauto-updatingtime saving:  auto-update BELIEF_UPDATEmemory saving:  auto-updatespeed enhance:  auto-updateTurns auto-updating on or off.
setBytes(String, byte[]) - Method in class norsys.netica.User
setBytes()user-defined fields:  settingAttaches user-defined byte data to this object under category 'fieldName'.
setCaseFileDelimChar(char) - Method in class norsys.netica.Environ
setCaseFileDelimChar()case file:  separator charseparator char:  in case filetab chars in case filecommas in case filedelimeter characterEnviron:  setting case file charsSets the symbol used to separate data fields in a case file being created by Netica.
setComment(String) - Method in class norsys.netica.General
setComment()descriptive comment:  for net, node, or statenet:  descriptive commentnode:  descriptive commentstate:  descriptive commentSets the documentation or a description of an object.
setConstructorClass(String) - Static method in class norsys.netica.Node
setConstructorClass()Sets the classname that Netica-J will use to independently construct Nodes.
setConstructorClass(String) - Static method in class norsys.netica.Net
Deprecated. use env.setNetClass(class) instead.
setCPTable(float[]) - Method in class norsys.netica.Node
setCPTable()Sets the entire CPTable of this node in one call.
setCPTable(int[], float[]) - Method in class norsys.netica.Node
setCPTable() WILDCARD_STATEprobability (as float)node:  tablestables:  settingCPT table:  setting EVERY_STATESets the probabilities for each state of this node, conditioned on its parent nodes.
setCPTable(String, float[]) - Method in class norsys.netica.Node
setCPTable()This does the same as setCPTable(int[], float[]) except that it takes the parent states as a string rather than as an integer array.
setDisplayMode(int) - Method in class norsys.netica.gui.NodePanel
Sets whether the node is displayed as grayed, normal, or hi-lited.
setDisplayMode(int) - Method in class norsys.netica.gui.LinkGraphic
Sets whether the link is displayed as grayed, normal, or hi-lited.
setElimOrder(NodeList) - Method in class norsys.netica.Net
setElimOrder()net:  elimination orderSets an "Elimination order" of all the nodes in this net, used to guide compiling to find an efficient junction tree.
setEndPoint(Point) - Method in class norsys.netica.gui.LinkGraphic
Sets the endpoint (arrowhead end) of the link, using Graphics coordinates.
setEquation(String) - Method in class norsys.netica.Node
setEquation()node:  equationequation:  settingSets the equation giving the probability of this node conditioned on its parent nodes, or the value of this node as a function of its parents.
setExperTable(double) - Method in class norsys.netica.Node
setExperTable() EVERY_STATESets the experience of this node as a function of its parent nodes.
setExperTable(int[], double) - Method in class norsys.netica.Node
setExperTable() WILDCARD_STATEnode:  experience tabletables:  settingexperience table:  setting EVERY_STATESets the experience of this node as a function of its parent nodes.
setInputDelay(int, int, String) - Method in class norsys.netica.Node
setInputDelay()node-set:  input delaySets the "time" delay for a link of this dynamic Bayes net (DBN) to delay.
setInputName(int, String) - Method in class norsys.netica.Node
setInputName() NAME_MAXnode:  input namesSets the name of this node's input (i.e., link).
setKind(int) - Method in class norsys.netica.Node
setKind() NATURE_NODE DECISION_NODE UTILITY_NODE CONSTANT_NODEnode kindnode:  kindSets whether this node is a nature, decision, utility or constant node.
setLevels(double[]) - Method in class norsys.netica.Node
setLevels()interval nodeinteger nodecontinuouslevel of discretized node (as double)node:  modifying statesnode:  discretizingstates:  discretizingstates:  levelsstates:  number of INFINITYlevels listdiscretizationreal valueSets the levels list of this node to levels.
setLinkPolicy(int) - Method in class norsys.netica.gui.NetPanel
Sets the policy for displaying links, that is, whether they appear above or below NodePanels, or not at all.
setMaxIterations(int) - Method in class norsys.netica.Learner
setMaxIterations()maximum iterations during learningiterations, controling learningtermination of learning algorithmLearner:  termination conditionSets the maximum number of learning-step iterations (i.e., complete passes through the data) which will be done when learner is used, after which learning will be automatically terminated.
setMaxMemoryUsage(double) - Method in class norsys.netica.Environ
Deprecated. use setMemoryUsageLimit (maxMem) instead.
setMaxTolerance(double) - Method in class norsys.netica.Learner
setMaxTolerance()maximum tolerance during learningtolerance, controling learningtermination of learning algorithmLearner:  termination conditionSets the tolerance for the minimum change in data log likelihood between consecutive passes through the data, as a termination condition for any learning to be done by learner.
setMemoryUsageLimit(double) - Method in class norsys.netica.Environ
setMemoryUsageLimit()Environ:  limiting memory usagememory usage limitingCall this method anytime to adjust the amount of memory that Netica is permitted to allocate for tables.
setMissingDataChar(char) - Method in class norsys.netica.Environ
setMissingDataChar()case file:  missing data char* in case file? in case filemissing data characterEnviron:  setting case file charsSets the symbol to be used for indicating missing data fields in a case file created by Netica.
setName(String) - Method in class norsys.netica.General
setName()net:  namenode:  namestate:  namename:  of net, node, or state NAME_MAXChanges the name of this object to be name.
setNetClass(Class) - Method in class norsys.netica.Environ
 
setNodeClass(Class) - Method in class norsys.netica.Environ
 
setNodesetColor(String, Color) - Method in class norsys.netica.Net
setNodesetColor()Colorcolor of nodenode:  colornode-set:  coloringvisual appearance:  color of nodeThis sets the color of nodeset to color.
setNodeStyle(NodeList, int) - Method in class norsys.netica.gui.NetPanel
Change the display mode style of all the nodes in nodeList to newStyle.
setNumber(String, double) - Method in class norsys.netica.User
setNumber()user-defined fields:  settingAttaches user-defined numeric data to this object under category 'fieldName'.
setNumeric(double) - Method in class norsys.netica.State
setNumeric()Sets the real value to be associated with this discrete state.
setObject(String, Serializable) - Method in class norsys.netica.User
setObject()user-defined fields:  settingAttaches user-defined object data to this object under category 'fieldName'.
setPassword(String) - Method in class norsys.netica.Streamer
setPassword().neta file format:  in useStreamer:  setting passwordStreamer:  in useencryptionencryptionpassword for encryptionSets the password that Netica will use for either encrypting an output stream, or for decrypting an input stream.
setPersistance(int, String) - Method in class norsys.netica.Node
setPersistance()node-set:  input delaySets the time persistance for a node of a dynamic Bayes net (DBN), which is the maximum time it should hold its value before taking on a new one.
setPosition(double, double) - Method in class norsys.netica.VisualNode
setPosition()coordinates of nodelocation of nodecenter of nodemove node on diagramnode:  visual positionvisual appearance:  position of nodeposition of nodeMoves this node so that its center is at coordinates (x, y), for any visual display (e.g., in Netica Application).
setRandomGenerator(RandomGenerator, boolean) - Method in class norsys.netica.Net
setRandomGenerator()Associates a random generator randomGenerator with this net, so that all operations on this net that require randomness will use randomGenerator (unless overridden by another generator, as described in documentation for the particular function being used).
setReal(double) - Method in class norsys.netica.Value
setReal()Same as enterReal(double), only it first clears the node's value (by calling clear).
setRealFuncTable(int[], double) - Method in class norsys.netica.Node
setRealFuncTable()utility tables WILDCARD_STATEnode:  function tabletables:  settingfunction table:  setting EVERY_STATESets the real value of this (continuous) deterministic node as a function of its parent nodes.
setReference(Object) - Method in class norsys.netica.User
setReference()user-defined fields:  settingAttaches an arbitrary data object to this User object.
setStartPoint(Point) - Method in class norsys.netica.gui.LinkGraphic
Sets the startpoint (non-arrowhead end) of the link, using Graphics coordinates.
setState(int) - Method in class norsys.netica.Value
setState()finding:  enteringpositive finding:  enteringSame as enterState only it first clears the value (by calling clear).
setState(String) - Method in class norsys.netica.Value
setState()Same as enterState(String), only it first clears the node's value (by calling clear).
setStateFuncTable(int[], int) - Method in class norsys.netica.Node
setStateFuncTable() WILDCARD_STATEnode:  function tabletables:  settingfunction table:  setting EVERY_STATESets the state value of this (discrete or discretized) deterministic node as a function of its parent nodes.
setStateNames(String) - Method in class norsys.netica.Node
setStateNames()Names the states of this node using the list of names names.
setString(String, String) - Method in class norsys.netica.User
setString()user-defined fields:  settingAttaches user-defined text data to this object under category 'fieldName'.
setStroke(Stroke) - Method in class norsys.netica.gui.LinkGraphic
Sets the java.awt.Stroke used for drawing the line portion (body) of the link.
setStyle(String) - Method in class norsys.netica.VisualNode
setStyle()Default node styleAbsent node styleShape node styleLabeledBox node styleBeliefBars node styleBeliefLine node styleMeter node stylenode:  visual stylevisual appearance:  style of nodestyle of nodeSets the style of this node for any visual display (e.g., in Netica Application, or within a NetPanel).
setSubnet(NodeList) - Method in class norsys.netica.gui.NetPanel
Display only those nodes in nodeList.
setTitle(String) - Method in class norsys.netica.General
setTitle()net:  titlenode:  titlestate:  titleSets the title of this object to the unrestricted string title.
setupPanel() - Method in class norsys.netica.gui.NodePanel
Create subcomponents of this NodePanel and add them to this Container.
setupPanel() - Method in class norsys.netica.gui.NodePanel_LabeledBox
 
setupPanel() - Method in class norsys.netica.gui.NodePanel_BeliefBars
 
setupPanel() - Method in class norsys.netica.gui.NodePanel_BeliefBar
 
setupPanel() - Method in class norsys.netica.gui.NodePanel_Text
 
setupPanel() - Method in class norsys.netica.gui.NodePanel_Circle
 
sizeCompiled() - Method in class norsys.netica.Net
sizeCompiled()junction tree:  sizenet:  size compiledmemory requiredspeed of inferencecompile net:  size resultingsize of junction treespeed of inferenceReturns the total size of the internal structure created by compiling a net (i.e., the junction tree, including sepsets), considering the findings currently entered.
State - class norsys.netica.State.
A state of a discrete Node, or a state of a discretized continuous Node.
STATE_NOT_VALUE - Static variable in class norsys.netica.Value
STATE_NOT_VALUESTATE_NOT_VALUEThis (discrete or discretized) node is not in one or more of its possible states, and could be in at least two states.
STATE_VALUE - Static variable in class norsys.netica.Value
STATE_VALUESTATE_VALUEThis (discrete or discretized) node is in precisely a single one of its states.
state(int) - Method in class norsys.netica.Node
state()Returns a state of this node.
state(String) - Method in class norsys.netica.Node
state()Returns a state of this node.
stateNameLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBarsRow
The state name JLabel Component.
stateNameLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBarRow
The state name JLabel Component.
stateValueLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBarsRow
The state value JLabel Component.
stateValueLabel - Variable in class norsys.netica.gui.NodePanel_BeliefBarRow
The state value JLabel Component.
Streamer - class norsys.netica.Streamer.
An I/O handle to a file (for reading, writing, etc.).
Streamer(InputStream, String, Environ) - Constructor for class norsys.netica.Streamer
Streamer()Constructs a Norsys stream from a java.io.InputStream.
Streamer(OutputStream, String, Environ) - Constructor for class norsys.netica.Streamer
Streamer()Constructs a Norsys stream from a java.io.OutputStream.
Streamer(String) - Constructor for class norsys.netica.Streamer
Streamer()Constructs a Norsys stream for the file with name filename, in the current default Environ (see getDefaultEnviron).
Streamer(String, Environ) - Constructor for class norsys.netica.Streamer
Streamer()Streamer:  creatingConstructs a Norsys stream for the file with name filename.
switchParent(int, Node) - Method in class norsys.netica.Node
switchParent()disconnected link:  connectingnode:  parentsSwitches the parent of the identified link with newParent.

T

testWithCaseset(Caseset) - Method in class norsys.netica.NetTester
testWithCaseset()NumCases column in case fileNetTester:  doing testsScans through the case data in caseset to do a number of performance tests on a Bayes net (specified when creating the this NetTester).
TEXT_TYPE - Static variable in class norsys.netica.Node
TEXT_TYPETEXT_TYPEA future type of Node, one used for holding or rendering text.
toDoubles(float[]) - Static method in class norsys.netica.Util
toDoubles()Converts a float array to a double array.
toFloats(double[]) - Static method in class norsys.netica.Util
toFloats()Converts a double array to a float array.
toString() - Method in class norsys.netica.NeticaError
toString()Returns a readable string representation of this error.
toString() - Method in class norsys.netica.General
toString()Returns the value of getName.
toString() - Method in class norsys.netica.gui.LinkGraphic
Returns a compact description of the link.

U

uncompile() - Method in class norsys.netica.Net
uncompile()memory saving:  uncompilingdecompile netjunction tree:  deletingcompile net:  uncompilingnet:  uncompilingReleases the resources (e.g., memory) used by a compiled net.
UNDEF_DBL - Static variable in class norsys.netica.Environ
UNDEF_DBLUNDEF_DBLThe number used to represent unknown or nonexistent numeric values.
UNDEF_STATE - Static variable in class norsys.netica.Node
Deprecated. use State.UNDEF_STATE
UNDEF_STATE - Static variable in class norsys.netica.State
UNDEF_STATEUNDEF_STATEIndicates that the state value is unknown or nonexistent.
undoLastOperation(double) - Method in class norsys.netica.Net
undoLastOperation()node:  undoing changenet:  undoing changereversing net operationerror recovery:  reversing operationsatomic operations:  undoingUndoes the last operation done to this net (or any node in it), leaving the net in the same state as it was before the operation was done.
User - class norsys.netica.User.
A class that provides facilities for defining and retrieving arbitrary user-defined data.
USER_ABORTED_CND - Static variable in class norsys.netica.NeticaError
USER_ABORTED_CNDUSER_ABORTED_CNDUser halted the method before it completed (not possible when using a Netica API version without the user interface).
user() - Method in class norsys.netica.General
user()Retrieve the User object that stores user controlled data associated with this object.
Util - class norsys.netica.Util.
A collection of static methods of general use to Java developers.
UTILITY_NODE - Static variable in class norsys.netica.Node
UTILITY_NODEUTILITY_NODEThis node specifies the agent's desires; its expected value will be maximized.

V

Value - class norsys.netica.Value.
The Value object is used to set a variable (node) to a certain value, or to provide uncertain information on the value.
VARIANCE_OF_REAL_SENSV - Static variable in class norsys.netica.Sensitivity
VARIANCE_OF_REAL_SENSVVARIANCE_OF_REAL_SENSVMeasure variance or mean squared change on the real numeric value (rather than just the state).
VARIANCE_SENSV - Static variable in class norsys.netica.Sensitivity
VARIANCE_SENSVVARIANCE_SENSVMeasure variance or mean squared change.
visual() - Method in class norsys.netica.Node
visual()Return the VisualNode object which can be used to control the visual display of this node in Netica Application.
VisualNode - class norsys.netica.VisualNode.
An object representing the visual aspects of a Netica Node as it would be displayed in the Netica Application.

W

WARNING_ERR - Static variable in class norsys.netica.NeticaError
WARNING_ERRWARNING_ERREvent occurred at "warning" level - safe to proceed (e.g., user error, recovered okay).
write(Streamer) - Method in class norsys.netica.Net
write().neta file format.dne/.dnet file formatnet:  writing to fileStreamer:  writing toWrites this net to a stream specified by outStream.
writeCase(NodeList, Streamer, long, double) - Method in class norsys.netica.Net
Deprecated. use writeFindings instead. Note that the order of the parameters has changed to be consistent with that for readFindings.
writeCases(Streamer, String) - Method in class norsys.netica.Caseset
writeCases()case file:  creatingCaseset:  writing to fileStreamer:  writing toWrites all the cases within this Caseset to outStream.
writeFindings(Streamer, NodeList, long, double) - Method in class norsys.netica.Net
writeFindings()findings:  writing to filenet:  writing findings to fileStreamer:  writing toCaseset position (as long)case file:  creatingSaves in file the set of findings currently entered in nodeList, so that later they can be read back with readFindings.

X

XXX_ERR - Static variable in class norsys.netica.NeticaError
XXX_ERRXXX_ERRInternal error, things left inconsistent - continuing could crash system.
A B C D E F G H I J L M N O P Q R S T U V W X
Overview  Package  Class  Tree  Deprecated   Index  Help 
 PREV   NEXT FRAMES    NO FRAMES